v1.0.15

Changed

• Updated documentation

Added

• Memory requirements for each process

v1.0.14

Fixed

• Updated whole workflow to bring up-to-date with recent template changes

Added

• Configuration for running demo data in AWS

v1.0.13

Fixed

• Updated sample sheet to expect a file

v1.0.12

Changed

• Updated description in manifest

v1.0.11

Changed

• Documentation
• Nextflow schema

v1.0.10

Changed

• Report card more intelligent to drop-outs
• Group 2 SNPs now included in reports
• CSV is more straight forward to interpret
• Single sample report uses results from previous reporting step
• Appendix report removed
• Group 3 variants no longer reported
• VariantDB - added ONT reviewed variants

Added

• Added coverage details to CSV
• Warning to single sample report in the case of target failure
• ONT reviewed group 3 variants are now reported (moved to V3)

v1.0.9

Fixed

• No reads in NTC causing whatshap failure
• Annotation issue for MNPs
• Phasing issue where variant at pos 1 & 3 but not 2

Updated

• Base image to v0.2.0

v1.0.8

Fixed

• Issue with phased variants
• Issue with report when there are unclassified reads

Changed

• Fastqingress metadata map

v1.0.7

Added

• Group 2 and group 3 variants to csv

Changed

• EMB M306I - now ignoring strand bias filter

v1.0.6

Fixed

• Issue with changes to ingress and reports

Changed

• Better help text on cli
• Adding variants to csv output
• Keep only mapped reads

Fixed

• Downgraded pomoxis to prevent issues with empty bams