v1.0.0

Added

• Workflow can now take either a BAM file or FASTQ file as input.

Changed

• Improved Medaka speed on ARM processors.
• Updated documentation format.

Fixed

• Parameter to turn off assembly has been fixed.

v0.0.8

Changed

• Bumped minimum required Nextflow version to 23.04.2.
• Enum choices are enumerated in the --help output.
• Enum choices are enumerated as part of the error message when a user has selected an invalid choice.
• Updated GitHub issue templates to force capture of more information.
• Example command to use demo data.
• Spaces in sample aliases are now replaced with underscores.
• Deprecated parameter process_label.

v0.0.7

Changed

• Updated whole workflow to bring up-to-date with recent template changes

Added

• Configuration for running demo data in AWS

v0.0.6

Changed

• Updated description in manifest

v0.0.5

Removed

• conda support

Changed

• Updating templates
• Documentation

Fixed

• Fix for error with empty VCF files (@MarieLataretu)

v0.0.4

Added

• Minimum coverage parameter

v0.0.2

Changed

• Tidied up docs
• Restricting assembly to only reads that map to mpx

v0.0.1

First release