v1.1.0

Changed

• Downsampling is no longer run by default
• Reduced test data sample size
• Some formatting in github issue template

Fixed

• Downsampling behaviour reworked to better catch errors from custom fasta references
• Reports are generated when no samples have met the criteria for nextclade analysis

Added

• RBK compatibility flag

v1.0.1

• Updated docs

v1.0.0

Changed

• Updated docs
• Cloud readiness

v0.0.11

Changed

• Output directory structure change
• Adjusted size and positioning of badges to improve layout of typing table
• Nextflow minimum version 23.04.2.

v0.0.10

Updated

• Update to schema to point to cloud demo

v0.0.9

Changed

• Update licence to ONT Public License
• Made --sample_sheet an optional parameter
• Improved Typing table in report to make typing results clearer

v0.0.8

Fixed

• Poor typing performance after INSaFLU update. Rollback to version used in v0.0.6.

v0.0.7

Added

• Added workflow-glue
• Added Kit 14 test data
• Abricate results included in the report

Changed

• CI updates
• Removed ping scripts
• Update check_sample_sheet.py
• --basecall_cfg is now used to determine a suitable Medaka model, alternatively provide the name of a model with --medaka_consensus_model to override automatic selection
• New fastqingress implementation

Updated

• INSaFLU v10

v0.0.6

Fixed

• Updated sample sheet to expect a file

v0.0.5

Changed

• Updated description in manifest