Merge branch 'tag' into 'dev'

tag See merge request epi2melabs/workflows/wf-clone-validation!162
epi2me-labs · Sep 6, 2023 · 8836059 · 8836059
2 parents 76bd3b2 + c4665e3
commit 8836059
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diff --git a/CHANGELOG.md b/CHANGELOG.md
@@ -4,7 +4,7 @@ All notable changes to this project will be documented in this file.
 The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.1.0/),
 and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html).
 
-## [unreleased]
+## [v0.5.1]
 ### Added
 - Additionally output plannotate annotations as a GenBank (`.gbk`) file.
 ### Removed

diff --git a/nextflow.config b/nextflow.config
@@ -59,7 +59,7 @@ manifest {
     description     = 'De-novo reconstruction of synthetic plasmid sequences.'
     mainScript      = 'main.nf'
     nextflowVersion = '>=23.04.2'
-    version         = 'v0.5.0'
+    version         = 'v0.5.1'
 }
 
 executor {

diff --git a/nextflow_schema.json b/nextflow_schema.json
@@ -46,6 +46,7 @@
                 "analyse_unclassified": {
                     "type": "boolean",
                     "title": "Analyse unclassified reads",
+                    "default": false,
                     "description": "Analyse unclassified reads from input directory. By default the workflow will not process reads in the unclassified directory.",
                     "help_text": "If selected and if the input is a multiplex directory the workflow will also process the unclassified directory."
                 },
@@ -150,12 +151,14 @@
                 },
                 "min_barcode": {
                     "type": "integer",
+                    "default": 0,
                     "title": "Minimum barcode",
                     "description": "Minimum numeric sample barcode ID to process.",
                     "help_text": "If multiplexed data is provided, this filter can be used to exclude certain samples from processing."
                 },
                 "max_barcode": {
                     "type": "integer",
+                    "default": 192,
                     "title": "Maximum barcode",
                     "description": "Maximum (inclusive) numeric sample barcode ID to process.",
                     "help_text": "If multiplexed data is provided, this filter can be used to exclude certain samples from processing."
@@ -232,16 +235,19 @@
                     "type": "boolean",
                     "description": "Display help text.",
                     "fa_icon": "fas fa-question-circle",
-                    "hidden": true
+                    "hidden": true,
+                    "default": false
                 },
                 "version": {
                     "type": "boolean",
+                    "default": false,
                     "description": "Display version and exit.",
                     "fa_icon": "fas fa-question-circle",
                     "hidden": true
                 },
                 "disable_ping": {
                     "type": "boolean",
+                    "default": false,
                     "description": "Enable to prevent sending a workflow ping."
                 }
             }