v0.2.2

Added

• Option to add suffix to HTML report name.
• Visualisation of prokka output.
• Choice of de novo assembly or alignment.
• Supports multibarcodes

Updated

• Medaka version.
• Depth coverage graphs.
• Use mosdepth and fastcat.

v0.2.1

Changed

• Update project with latest practices from wf-template.
• Use mamba by default when using conda profile.

Fixed

• Incorrect specification of conda environment file location.

v0.2.0

Changed

• Rework workflow to use new medaka methodology for improved robustness of results.

v0.1.3

Changed

• Standardised report name.

v0.1.1

Fixed

• aplanat import error

v0.1.0

Added

• Prokka can be optionally run to annotate consensus sequence.

Changed

• Variant call summary produced using aplanat report component.

v0.0.1

Initial release

Added

• Basic running of medaka variant calling and report.