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v0.2.7

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@epi2melabs-bot epi2melabs-bot released this 01 Dec 15:19
· 125 commits to master since this release

Changes

  • Replace QUAST with MetaQUAST
  • Add species ID to run summary table
  • For reference based assembly --reference_based_assembly parameter should now be provided with a --reference. The default is to use denovo assembly.
  • Tidy up presentation in report
  • -profile conda is no longer supported, users should use -profile standard (Docker) or -profile singularity instead
  • Docs update

Added

  • nextflow run epi2me-labs/wf-human-variation --version will now print the workflow version number and exit

Fixes

  • Prokka only runs in denovo assembly mode
  • Tidy up report code