Merge branch 'CW-2580-overwrites' into 'dev'

CW-2580-overwrites Closes CW-2580 See merge request epi2melabs/workflows/wf-bacterial-genomes!86
epi2me-labs · Aug 15, 2023 · cadba0f · cadba0f
2 parents 9ab3396 + e8a4ce5
commit cadba0f
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diff --git a/CHANGELOG.md b/CHANGELOG.md
@@ -4,6 +4,10 @@ All notable changes to this project will be documented in this file.
 The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.1.0/),
 and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html).
 
+## [unreleased]
+### Fixed
+- Overwrites in Nextflow config implemented incorrectly
+
 ## [v0.3.2]
 ### Fixed
 - Edge case where medaka variant output is unsorted and causes medaka annotate to exit

diff --git a/nextflow.config b/nextflow.config
@@ -148,17 +148,17 @@ profiles {
 timeline {
   enabled = true
   file = "${params.out_dir}/execution/timeline.html"
-  timeline.overwrite = true
+  overwrite = true
 }
 report {
   enabled = true
   file = "${params.out_dir}/execution/report.html"
-  report.overwrite = true
+  overwrite = true
 }
 trace {
   enabled = true
   file = "${params.out_dir}/execution/trace.txt"
-  trace.overwrite = true
+  overwrite = true
 }
 
 env {