Release 10.0 of the eNanoMapper ontology

What's Changed

Breaking changes

Changed subsumption of anatomical entity (from entity to material entity) by @jmillanacosta #397

Minor changes

• Added tests:
  • File and dependency integrity test on push (On push file integrity tests)
  • Refactored development tests (ROBOT enanomapper-dev build test)
  • Pre-release tests
• Slimmer bump (change to OWLAPI 5.5)
• Fixes issue with punning that made the ontology non-DL by @jmillanacosta in #391
• Added dependency graph by @jmillanacosta in #396

Term additions

• Added six more JRC materials by @egonw in #337
• Added liver from BTO by @jmillanacosta in #340
• Added HET-1A cell line by @jmillanacosta in #342
• Added Milligram per Kilogram per Day by @jmillanacosta in #344
• Added kg/m3 by @jmillanacosta in #346
• Added liver cell line by @jmillanacosta in #349
• Added msio config files for Lethal Dose term, solves #347 by @jmillanacosta in #352
• Adds msio to development external terms module by @jmillanacosta in #353
• Updated with WST-1 and 8 assays by @jmillanacosta in #359
• Added SDS-PAGE assay from NSC-Terminology by @jmillanacosta in #360
• Added file integrity unit tests by @jmillanacosta in #356
• Added FRAS by @jmillanacosta in #358
• Added term: pulmonary instillation by @jmillanacosta in #354
• Added PAGE by @jmillanacosta in #364
• Added msio by @jmillanacosta in #373
• Added bioimpedance assay by @jmillanacosta in #383

Full Changelog: v9.0...v10.0

Release 9 of the eNanoMapper ontology

Version 9 of the eNanoMapper Ontology (ENM) was released on the 4 January 2023.

What's new in version 9

• Build system based on GitHub Actions
• Added owl:versionIRI
• updated upstream ontologies (ChEBI, BAO, PATO, etc)
• Several pull requests:
  • Added term JRCNM40011a by @jmillanacosta in #328
  • Fixes #310 #329 by @jmillanacosta in #330
  • Fix/number by @egonw in #333

New Contributors

• @jmillanacosta made their first contribution in #328

Full Changelog: v8.0...v9.0

This release was made by the NanoSolveIT projects which has received funding from European Union Horizon 2020 Programme (H2020) under grant agreement nº 814572. Full funding information is available at https://github.com/enanomapper/ontologies/blob/master/README.md

Release 8 of the eNanoMapper ontology

Version 8 of the eNanoMapper Ontology (ENM) was released on the 11 August 2022.

What's new in version 8

• Updated upstream ontologies (bringing in fixes of various kinds)
• Addition of properties from CITO
• Two new contributors, and new contributing projects
• Adds a CITATION.cff

This release was made by the NanoCommons and NanoSolveIT projects which has received funding from European Union Horizon 2020 Programme (H2020) under grant agreement nº 731032 and nº 814572. Full funding information is available at https://github.com/enanomapper/ontologies/blob/master/README.md

Release 7 of the eNanoMapper ontology

Version 7 of the eNanoMapper Ontology (ENM) was released on the 4th February 2021.

What's new in version 7

• Addition of properties from various ontologies, such as BAO, CHEMINF, NPO, RO and SIO (see also GitHub issue #240).
• ACEnano - Analytical and Characterisation Excellence in nanomaterial risk assessment: A tiered approach (Grant Agreement 720952).
• Addition of more JRC materials, for more details see https://nanocommons.github.io/specifications/jrc/.
• Updated the GitHub repository with more granular permissions for easier community development.
• Removal of HUPSON slimmed ontology files as we used only one term.
• Integration of MESOCOSM [1] terms by NanoinformaTIX team.

1. A. Ayadi et al. MESOCOSM: A mesocosm database management system for environmental nanosafety. NanoImpact, January(21) 2021. https://doi.org/10.1016/j.impact.2020.100288

This release was made by the NanoCommons project which has received funding from European Union Horizon 2020 Programme (H2020) under grant agreement nº 731032. Full funding information is available at https://github.com/enanomapper/ontologies/blob/master/README.md

Release 6 of the eNanoMapper ontology

Version 6 of the eNanoMapper Ontology (ENM) was released on the 30th August 2019. ENM now covers 12732 classes, compared with 12531 classes in version 5.

What's new in version 6

• New NCIT version (submission 82 instead of 41 on BioPortal)
• Includes OECD Testing Guidelines, related to the Malta Initiative
• Includes various terms requested by Nanoreg2 and ACENano

You can find our new ontology on BioPortal, Aber-OWL, and the OLS.

This release was made by the NanoCommons project which has received funding from European Union Horizon 2020 Programme (H2020) under grant agreement nº 731032. Full funding information is available at https://github.com/enanomapper/ontologies/blob/master/README.md

Release 5 of the eNanoMapper ontology

Version 5 of the eNanoMapper Ontology (ENM) was released on the 13th of September 2018. ENM now covers 12531 classes, compared with 10881 classes in version 4.

What's new in version 5

• Now based on BFO 2
• New 3rd party ontology versions
• Includes most JRC nanomaterials (old and new codes)
• New used ontologies include FABIO and the AOP ontology

You can find our new ontology on BioPortal, Aber-OWL, and the OLS.

This release was made by the NanoCommons project which has received funding from European Union Horizon 2020 Programme (H2020) under grant agreement nº 731032. Full funding information is available at https://github.com/enanomapper/ontologies/blob/master/README.md

Final release of eNanoMapper ontology

v4.0 of the eNanoMapper Ontology (ENM) covers 10,881 classes, compared with 8407 classes in version 3.

What's new in eNM V4.0:

• 162 New modelling-related terms selected by NTUA have been added to cover experimental and calculated (image analysis and algorithm-derived) descriptors.
• Around 200 new terms have been added as a result of input from the NanoSafety Cluster Community (NANoREG, Nano WG and NECID etc.).
• As a byproduct of the development of the eNanoMapper Ontology, interaction with upstream ontologies has led to the incorporation of several terms in other ontologies, particularly in the Bioassay Ontology (BAO), the Information Artifact Ontology (IAO) and the NanoParticle Ontology (NPO).

Third release of eNanoMapper ontology

Version 3 of the eNanoMapper Ontology (ENM) was released on the 1st of March 2016. ENM now covers 8407 classes, compared with 6690 classes in version 2.

What's new in version 3
● Based on input from various NSC projects, the ENM now includes classes relating to applications of nanomaterials, drawn from the Chemical Entities of Biological Interest Ontology (CHEBI).
● From the NanoParticle Ontology (NPO), several additional classes of nanoparticles have been added, such as metal nanoparticle and silica nanoparticle.
● Terms from the Statistics Ontology (STATO), the Gene Ontology (GO) and the National Cancer Institute Thesaurus (NCIT) have been included in the ENM for the first time, providing coverage for several statistical methods, additional assays and study characteristics, respectively.

You can find our new ontology on BioPortal, Aber-OWL, and the OLS beta.

🔜 Release version 4
For the next release, scheduled for September 2016, we plan to add terms related with modelling and human exposure to nanomaterials.

Second release of eNanoMapper ontology

Since the first release, we have addressed several requests, added content from several additional ontologies and added additional content from the already used ontologies, and refactored some of the ontology branches.

Initial release

The initial release of the eNanoMapper ontology for use and comments.