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Merge branch 'release/v2.3.0'
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bot committed Sep 27, 2023
2 parents f17f2f5 + 4b1c387 commit a94bf9e
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Showing 62 changed files with 542 additions and 1,108 deletions.
2 changes: 1 addition & 1 deletion .circleci/config.yml
Expand Up @@ -1601,7 +1601,7 @@ commands:
orbs:
maven: circleci/maven@1.0.1
openjdk-install: cloudesire/openjdk-install@1.2.3
sonarcloud: sonarsource/sonarcloud@1.0.2
sonarcloud: sonarsource/sonarcloud@2.0.0

executors:
docker-python3:
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7 changes: 6 additions & 1 deletion .github/dependabot.yml
Expand Up @@ -13,4 +13,9 @@ updates:
- dependency-name: "*"
update-types: ["version-update:semver-major"]
- dependency-name: "org.antlr:*"
update-types: ["version-update:semver-minor"]
update-types: ["version-update:semver-minor"]
- package-ecosystem: "github-actions"
directory: "/"
schedule:
# Check for updates to GitHub Actions every week
interval: "weekly"
6 changes: 3 additions & 3 deletions .github/workflows/build.yml
Expand Up @@ -12,12 +12,12 @@ jobs:
runs-on: ubuntu-latest
steps:
- name: Checkout
uses: actions/checkout@v2
uses: actions/checkout@v4
with:
fetch-depth: 0

- name: Setup Java
uses: actions/setup-java@v2
uses: actions/setup-java@v3
with:
distribution: 'temurin'
java-version: '17'
Expand All @@ -27,7 +27,7 @@ jobs:
run: mvn -B verify

- name: Setup Maven Central
uses: actions/setup-java@v2
uses: actions/setup-java@v3
with:
distribution: 'temurin'
java-version: '17'
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7 changes: 4 additions & 3 deletions .github/workflows/codeql.yml
Expand Up @@ -40,12 +40,13 @@ jobs:

steps:
- name: Checkout repository
uses: actions/checkout@v3
uses: actions/checkout@v4

- name: setup java 17
uses: actions/setup-java@v1
uses: actions/setup-java@v3
with:
java-version: 17
distribution: 'temurin'
java-version: 17

# Initializes the CodeQL tools for scanning.
- name: Initialize CodeQL
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2 changes: 1 addition & 1 deletion .github/workflows/release.yml
Expand Up @@ -13,7 +13,7 @@ jobs:
runs-on: ubuntu-latest
steps:
- name: Checkout
uses: actions/checkout@v3
uses: actions/checkout@v4
with:
fetch-depth: 0
# This will be used by git in all further steps
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6 changes: 6 additions & 0 deletions CHANGELOG.md
Expand Up @@ -2,6 +2,11 @@

Note: version releases in the 0.x.y range may introduce breaking changes.

## [2.3.0]
### Added
- AQL Dto model add terminology , and Versioning ([#511](https://github.com/ehrbase/openEHR_SDK/pull/511))
### Fixed

## [2.2.0]
### Added
### Fixed
Expand Down Expand Up @@ -334,3 +339,4 @@ Note: version releases in the 0.x.y range may introduce breaking changes.
[2.0.0]: https://github.com/ehrbase/openEHR_SDK/compare/v1.29.0...v2.0.0
[2.1.0]: https://github.com/ehrbase/openEHR_SDK/compare/v2.0.0...v2.1.0
[2.2.0]: https://github.com/ehrbase/openEHR_SDK/compare/v2.1.0...v2.2.0
[2.3.0]: https://github.com/ehrbase/openEHR_SDK/compare/v2.2.0...v2.3.0
2 changes: 1 addition & 1 deletion aql/pom.xml
Expand Up @@ -25,7 +25,7 @@
<parent>
<groupId>org.ehrbase.openehr.sdk</groupId>
<artifactId>sdk-parent</artifactId>
<version>2.2.0</version>
<version>2.3.0</version>
</parent>

<artifactId>aql</artifactId>
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Expand Up @@ -168,6 +168,7 @@ fragment MINUTE: [0-5][0-9] ; // minutes
fragment SECOND: [0-5][0-9] ; // seconds

// ------------------- special word symbols --------------
BOOLEAN: SYM_TRUE | SYM_FALSE ;

fragment SYM_TRUE: T R U E ;
fragment SYM_FALSE: F A L S E ;
Expand All @@ -181,6 +182,8 @@ IDENTIFIER: IDENTIFIER_CHAR;
fragment IDENTIFIER_CHAR : ALPHA_CHAR WORD_CHAR* ;
fragment ARCHETYPE_CONCEPT_ID : ALPHA_CHAR NAME_CHAR* ;



// --------------------- composed primitive types -------------------
// coded term shortcut e.g. 'ICD10AM(1998)::F23', 'ISO_639-1::en' or 'snomed_ct(3.1)::3415004|cyanosis|'
TERM_CODE : TERM_CODE_CHAR+ ( '(' TERM_CODE_CHAR+ ')' )? '::' TERM_CODE_CHAR+ ('|' ~[|[\]]+ '|')?;
Expand Down Expand Up @@ -241,8 +244,6 @@ fragment LABEL: ALPHA_CHAR (NAME_CHAR|URI_PCT_ENCODED)* ;

// --------------------- atomic primitive types -------------------

BOOLEAN: SYM_TRUE | SYM_FALSE ;

INTEGER: DIGIT+;
REAL: DIGIT* '.' DIGIT+;
SCI_INTEGER: INTEGER E_SUFFIX;
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Expand Up @@ -19,14 +19,22 @@

import com.fasterxml.jackson.annotation.JsonIdentityInfo;
import com.fasterxml.jackson.annotation.ObjectIdGenerators;
import com.fasterxml.jackson.databind.annotation.JsonDeserialize;
import com.fasterxml.jackson.databind.annotation.JsonSerialize;
import java.util.ArrayList;
import java.util.List;
import java.util.Objects;
import org.ehrbase.openehr.sdk.aql.dto.path.AndOperatorPredicate;
import org.ehrbase.openehr.sdk.aql.serializer.PredicateDeserializer;
import org.ehrbase.openehr.sdk.aql.serializer.PredicateSerializer;

/**
* @author Stefan Spiska
*/
@JsonIdentityInfo(generator = ObjectIdGenerators.PropertyGenerator.class, property = "identifier")
public abstract class AbstractContainmentExpression implements Containment {

protected List<AndOperatorPredicate> predicates;
private Containment contains;

private String identifier;
Expand All @@ -47,21 +55,40 @@ public void setIdentifier(String identifier) {
this.identifier = identifier;
}

@JsonSerialize(using = PredicateSerializer.class)
public List<AndOperatorPredicate> getPredicates() {
return predicates;
}

@JsonDeserialize(using = PredicateDeserializer.class)
public void setPredicates(List<AndOperatorPredicate> predicates) {
if (predicates != null) {
this.predicates = new ArrayList<>(predicates);
} else {
this.predicates = null;
}
}

@Override
public boolean equals(Object o) {
if (this == o) return true;
if (o == null || getClass() != o.getClass()) return false;
AbstractContainmentExpression that = (AbstractContainmentExpression) o;
return Objects.equals(contains, that.contains) && Objects.equals(identifier, that.identifier);
return Objects.equals(predicates, that.predicates)
&& Objects.equals(contains, that.contains)
&& Objects.equals(identifier, that.identifier);
}

@Override
public int hashCode() {
return Objects.hash(contains, identifier);
return Objects.hash(predicates, contains, identifier);
}

@Override
public String toString() {
return "AbstractContainmentExpression{" + "contains=" + contains + ", identifier='" + identifier + '\'' + '}';
return "AbstractContainmentExpression{" + "predicates="
+ predicates + ", contains="
+ contains + ", identifier='"
+ identifier + '\'' + '}';
}
}
Expand Up @@ -17,21 +17,12 @@
*/
package org.ehrbase.openehr.sdk.aql.dto.containment;

import com.fasterxml.jackson.databind.annotation.JsonDeserialize;
import com.fasterxml.jackson.databind.annotation.JsonSerialize;
import java.util.ArrayList;
import java.util.List;
import java.util.Objects;
import org.ehrbase.openehr.sdk.aql.dto.path.AndOperatorPredicate;
import org.ehrbase.openehr.sdk.aql.serializer.PredicateDeserializer;
import org.ehrbase.openehr.sdk.aql.serializer.PredicateSerializer;

public class ContainmentClassExpression extends AbstractContainmentExpression {

private String type;

private List<AndOperatorPredicate> predicates;

public String getType() {
return type;
}
Expand All @@ -40,35 +31,22 @@ public void setType(String type) {
this.type = type;
}

@JsonSerialize(using = PredicateSerializer.class)
public List<AndOperatorPredicate> getPredicates() {
return predicates;
}

@JsonDeserialize(using = PredicateDeserializer.class)
public void setPredicates(List<AndOperatorPredicate> predicates) {
this.predicates = new ArrayList<>(predicates);
}

@Override
public boolean equals(Object o) {
if (this == o) return true;
if (o == null || getClass() != o.getClass()) return false;
if (!super.equals(o)) return false;
ContainmentClassExpression that = (ContainmentClassExpression) o;
return Objects.equals(type, that.type) && Objects.equals(predicates, that.predicates);
return Objects.equals(type, that.type);
}

@Override
public int hashCode() {
return Objects.hash(super.hashCode(), type, predicates);
return Objects.hash(super.hashCode(), type);
}

@Override
public String toString() {
return "ContainmentClassExpression{" + "type='"
+ type + '\'' + ", predicates="
+ predicates + "} "
+ super.toString();
return "ContainmentClassExpression{" + "type='" + type + '\'' + "} " + super.toString();
}
}
Expand Up @@ -17,7 +17,63 @@
*/
package org.ehrbase.openehr.sdk.aql.dto.containment;

import java.util.List;
import java.util.Objects;
import org.ehrbase.openehr.sdk.aql.dto.path.AndOperatorPredicate;

/**
* @author Stefan Spiska
*/
public class ContainmentVersionExpression extends AbstractContainmentExpression {}
public class ContainmentVersionExpression extends AbstractContainmentExpression {

public enum VersionPredicateType {
LATEST_VERSION,
ALL_VERSIONS,
STANDARD_PREDICATE;
}

private VersionPredicateType versionPredicateType;

public VersionPredicateType getVersionPredicateType() {
return versionPredicateType;
}

public void setVersionPredicateType(VersionPredicateType versionPredicateType) {
this.versionPredicateType = versionPredicateType;

if (versionPredicateType.equals(VersionPredicateType.ALL_VERSIONS)
|| versionPredicateType.equals(VersionPredicateType.LATEST_VERSION)) {
setPredicates(null);
}
}

@Override
public void setPredicates(List<AndOperatorPredicate> predicates) {
super.setPredicates(predicates);

if (predicates != null) {
versionPredicateType = VersionPredicateType.STANDARD_PREDICATE;
}
}

@Override
public boolean equals(Object o) {
if (this == o) return true;
if (o == null || getClass() != o.getClass()) return false;
if (!super.equals(o)) return false;
ContainmentVersionExpression that = (ContainmentVersionExpression) o;
return versionPredicateType == that.versionPredicateType;
}

@Override
public int hashCode() {
return Objects.hash(super.hashCode(), versionPredicateType);
}

@Override
public String toString() {
return "ContainmentVersionExpression{" + "versionPredicateType="
+ versionPredicateType + "} "
+ super.toString();
}
}
@@ -1,5 +1,5 @@
/*
* Copyright (c) 2022 vitasystems GmbH and Hannover Medical School.
* Copyright (c) 2023 vitasystems GmbH and Hannover Medical School.
*
* This file is part of project openEHR_SDK
*
Expand All @@ -15,14 +15,9 @@
* See the License for the specific language governing permissions and
* limitations under the License.
*/
package org.ehrbase.openehr.sdk.aql.roundtriptest;
package org.ehrbase.openehr.sdk.aql.dto.operand;

/**
* @author Stefan Spiska
*/
public interface AqlTestCase {

String getTestAql();

String getExpectedAql();
}
public interface FunctionCall extends ColumnExpression, Operand, ComparisonLeftOperand {}
Expand Up @@ -27,6 +27,7 @@
import org.ehrbase.openehr.sdk.aql.dto.containment.AbstractContainmentExpression;
import org.ehrbase.openehr.sdk.aql.dto.path.AndOperatorPredicate;
import org.ehrbase.openehr.sdk.aql.dto.path.AqlObjectPath;
import org.ehrbase.openehr.sdk.aql.render.AqlRenderer;
import org.ehrbase.openehr.sdk.aql.serializer.PredicateDeserializer;
import org.ehrbase.openehr.sdk.aql.serializer.PredicateSerializer;

Expand Down Expand Up @@ -87,4 +88,8 @@ public int hashCode() {
public String toString() {
return "IdentifiedPath{" + "root=" + root + ", rootPredicate=" + rootPredicate + ", path=" + path + '}';
}

public String render() {
return AqlRenderer.render(this);
}
}
Expand Up @@ -23,7 +23,7 @@
/**
* @author Stefan Spiska
*/
public class SingleRowFunction implements ColumnExpression, Operand, ComparisonLeftOperand {
public class SingleRowFunction implements FunctionCall {

private SingleRowFunctionName functionName;
private List<Operand> operandList;
Expand Down

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