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Bayesian SINDy

Bayesian SINDy #1491

Workflow file for this run

name: Tests
on:
push:
branches:
- master
pull_request:
branches:
- master
jobs:
Linting:
runs-on: ubuntu-latest
steps:
- uses: actions/checkout@v3
- name: Set up Python
uses: actions/setup-python@v3
with:
python-version: "3.9"
- name: Linting
run: |
pip install pre-commit
pre-commit run --all-files
Linux:
needs: Linting
runs-on: ubuntu-latest
strategy:
max-parallel: 4
matrix:
python-version: ["3.8", "3.10"]
steps:
- uses: actions/checkout@v3
- name: Set up Python ${{ matrix.python-version }}
uses: actions/setup-python@v3
with:
python-version: ${{ matrix.python-version }}
- name: Install dependencies
run: |
pip install --upgrade pip
pip install .[dev,miosr,cvxpy,sbr]
- name: Build the docs
# Not exactly how RTD does it, but close.
run: |
sudo apt-get update -y
sudo apt-get install pandoc
pip install .[docs]
cd docs
python -m sphinx -T -E -W -b html -d _build/doctrees . _build/html
cd ..
- name: Test with pytest
run: |
coverage run --source=pysindy -m pytest test -m "not slow" && coverage xml
- name: Upload coverage to Codecov
uses: codecov/codecov-action@v3
with:
token: ${{ secrets.CODECOV_TOKEN }}
file: ./coverage.xml
- uses: actions/cache@v3
with:
path: ~/.cache/pip
key: ${{ runner.os }}-pip-${{ hashFiles('**/requirements-dev.txt') }}
restore-keys: |
${{ runner.os }}-pip-