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@dozmorovlab

Dozmorov Lab

Genomics, bionformatics, computational biology, 3D genome, Hi-C

Popular repositories

  1. TADCompare TADCompare Public

    Package for analysis and characterization of differential TADs

    R 22 2

  2. excluderanges excluderanges Public

    Genomic coordinates of problematic genomic regions as GRanges

    R 19 2

  3. HiCcompare HiCcompare Public

    Joint normalization of two Hi-C matrices, visualization and detection of differential chromatin interactions. See multiHiCcompare for the analysis of multiple Hi-C matrices

    R 16 3

  4. SpectralTAD SpectralTAD Public

    TAD Calling using spectral clustering in R

    R 7 3

  5. multiHiCcompare multiHiCcompare Public

    Joint normalization of multiple Hi-C matrices, visualization and detection of differential chromatin interactions, supporting covariates.

    R 6 7

  6. preciseTAD preciseTAD Public

    preciseTAD: A machine learning framework for precise 3D boundary prediction at base-level resolution

    R 6

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