Dozmorov Lab
Popular repositories
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excluderanges
excluderanges PublicGenomic coordinates of problematic genomic regions as GRanges
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HiCcompare
HiCcompare PublicJoint normalization of two Hi-C matrices, visualization and detection of differential chromatin interactions. See multiHiCcompare for the analysis of multiple Hi-C matrices
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multiHiCcompare
multiHiCcompare PublicJoint normalization of multiple Hi-C matrices, visualization and detection of differential chromatin interactions, supporting covariates.
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preciseTAD
preciseTAD PublicpreciseTAD: A machine learning framework for precise 3D boundary prediction at base-level resolution
R 6
Repositories
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- HiCcompare Public
Joint normalization of two Hi-C matrices, visualization and detection of differential chromatin interactions. See multiHiCcompare for the analysis of multiple Hi-C matrices
- CTCF Public Forked from mdozmorov/CTCF
Genomic coordinates of FIMO-predicted CTCF binding sites using JASPAR and other PWMs, human and mouse genome assemblies including mm39 and T2T. Also included experimentally derived ENCODE SCREEN CTCF-bound CREs.
- CTCF_orientation Public Forked from magmarshh/CTCF_orientation
Python tool to compute distribution of Loop's CTCF orientation in a pie chart format
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