Docker build on circle CI failed: cannot create /conf.d/docker-php-ext-mcrypt.ini: Directory nonexistent

[mvn-trungtran-dn]

#!/bin/bash -eo pipefail
sudo apt-get install -y libfreetype6-dev libjpeg62-turbo-dev libmcrypt-dev libpng12-dev && sudo docker-php-ext-install -j$(nproc) iconv mcrypt && sudo docker-php-ext-configure gd --with-freetype-dir=/usr/include/ --with-jpeg-dir=/usr/include/ && sudo docker-php-ext-install -j$(nproc) gd pdo_mysql
Reading package lists... Done


Building dependency tree       


Reading state information... Done

The following extra packages will be installed:
  libmcrypt4
Suggested packages:
  mcrypt
The following NEW packages will be installed:
  libfreetype6-dev libjpeg62-turbo-dev libmcrypt-dev libmcrypt4 libpng12-dev
0 upgraded, 5 newly installed, 0 to remove and 3 not upgraded.
Need to get 1505 kB of archives.
After this operation, 7627 kB of additional disk space will be used.


Get:1 http://deb.debian.org/debian/ jessie/main libpng12-dev amd64 1.2.50-2+deb8u3 [248 kB]

Get:2 http://deb.debian.org/debian/ jessie/main libfreetype6-dev amd64 2.5.2-3+deb8u2 [638 kB]

Get:3 http://deb.debian.org/debian/ jessie/main libjpeg62-turbo-dev amd64 1:1.3.1-12 [455 kB]

Get:4 http://deb.debian.org/debian/ jessie/main libmcrypt4 amd64 2.5.8-3.3 [71.2 kB]

Get:5 http://deb.debian.org/debian/ jessie/main libmcrypt-dev amd64 2.5.8-3.3 [92.9 kB]

Fetched 1505 kB in 0s (4769 kB/s)
debconf: delaying package configuration, since apt-utils is not installed
Selecting previously unselected package libpng12-dev:amd64.
(Reading database ... 27985 files and directories currently installed.)
Preparing to unpack .../libpng12-dev_1.2.50-2+deb8u3_amd64.deb ...
Unpacking libpng12-dev:amd64 (1.2.50-2+deb8u3) ...
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Unpacking libjpeg62-turbo-dev:amd64 (1:1.3.1-12) ...
Selecting previously unselected package libmcrypt4.
Preparing to unpack .../libmcrypt4_2.5.8-3.3_amd64.deb ...
Unpacking libmcrypt4 (2.5.8-3.3) ...
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Preparing to unpack .../libmcrypt-dev_2.5.8-3.3_amd64.deb ...
Unpacking libmcrypt-dev (2.5.8-3.3) ...
Setting up libpng12-dev:amd64 (1.2.50-2+deb8u3) ...
Setting up libfreetype6-dev (2.5.2-3+deb8u2) ...
Setting up libjpeg62-turbo-dev:amd64 (1:1.3.1-12) ...
Setting up libmcrypt4 (2.5.8-3.3) ...
Setting up libmcrypt-dev (2.5.8-3.3) ...
Processing triggers for libc-bin (2.19-18+deb8u10) ...
Configuring for:
PHP Api Version:         20160303
Zend Module Api No:      20160303
Zend Extension Api No:   320160303
checking for grep that handles long lines and -e... /bin/grep
checking for egrep... /bin/grep -E
checking for a sed that does not truncate output... /bin/sed
checking for cc... cc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables... 
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether cc accepts -g... yes
checking for cc option to accept ISO C89... none needed
checking how to run the C preprocessor... cc -E
checking for icc... no
checking for suncc... no
checking whether cc understands -c and -o together... yes
checking for system library directory... lib
checking if compiler supports -R... no
checking if compiler supports -Wl,-rpath,... yes
checking build system type... x86_64-pc-linux-gnu
checking host system type... x86_64-pc-linux-gnu
checking target system type... x86_64-pc-linux-gnu
checking for PHP prefix... /usr/local
checking for PHP includes... -I/usr/local/include/php -I/usr/local/include/php/main -I/usr/local/include/php/TSRM -I/usr/local/include/php/Zend -I/usr/local/include/php/ext -I/usr/local/include/php/ext/date/lib
checking for PHP extension directory... /usr/local/lib/php/extensions/no-debug-non-zts-20160303
checking for PHP installed headers prefix... /usr/local/include/php
checking if debug is enabled... no
checking if zts is enabled... no
checking for re2c... re2c
checking for re2c version... 0.13.5 (ok)
checking for gawk... no
checking for nawk... nawk
checking if nawk is broken... no
checking for iconv support... yes, shared
checking for iconv... yes
checking if iconv is glibc's... yes
checking if iconv supports errno... yes
checking if iconv supports //IGNORE... no
checking if your cpp allows macro usage in include lines... yes
checking for ld used by cc... /usr/bin/ld
checking if the linker (/usr/bin/ld) is GNU ld... yes
checking for /usr/bin/ld option to reload object files... -r
checking for BSD-compatible nm... /usr/bin/nm -B
checking whether ln -s works... yes
checking how to recognize dependent libraries... pass_all
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking dlfcn.h usability... yes
checking dlfcn.h presence... yes
checking for dlfcn.h... yes
checking the maximum length of command line arguments... 1572864
checking command to parse /usr/bin/nm -B output from cc object... ok
checking for objdir... .libs
checking for ar... ar
checking for ranlib... ranlib
checking for strip... strip
checking if cc supports -fno-rtti -fno-exceptions... no
checking for cc option to produce PIC... -fPIC
checking if cc PIC flag -fPIC works... yes
checking if cc static flag -static works... yes
checking if cc supports -c -o file.o... yes
checking whether the cc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes
checking whether -lc should be explicitly linked in... no
checking dynamic linker characteristics... GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking whether stripping libraries is possible... yes
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... yes
checking whether to build static libraries... no

creating libtool
appending configuration tag "CXX" to libtool
configure: creating ./config.status
config.status: creating config.h
/bin/bash /usr/src/php/ext/iconv/libtool --mode=compile cc -I"/usr/include" -DZEND_ENABLE_STATIC_TSRMLS_CACHE=1 -I. -I/usr/src/php/ext/iconv -DPHP_ATOM_INC -I/usr/src/php/ext/iconv/include -I/usr/src/php/ext/iconv/main -I/usr/src/php/ext/iconv -I/usr/local/include/php -I/usr/local/include/php/main -I/usr/local/include/php/TSRM -I/usr/local/include/php/Zend -I/usr/local/include/php/ext -I/usr/local/include/php/ext/date/lib  -DHAVE_CONFIG_H  -I/usr/include   -c /usr/src/php/ext/iconv/iconv.c -o iconv.lo 
mkdir .libs
 cc -I/usr/include -DZEND_ENABLE_STATIC_TSRMLS_CACHE=1 -I. -I/usr/src/php/ext/iconv -DPHP_ATOM_INC -I/usr/src/php/ext/iconv/include -I/usr/src/php/ext/iconv/main -I/usr/src/php/ext/iconv -I/usr/local/include/php -I/usr/local/include/php/main -I/usr/local/include/php/TSRM -I/usr/local/include/php/Zend -I/usr/local/include/php/ext -I/usr/local/include/php/ext/date/lib -DHAVE_CONFIG_H -I/usr/include -c /usr/src/php/ext/iconv/iconv.c  -fPIC -DPIC -o .libs/iconv.o
/bin/bash /usr/src/php/ext/iconv/libtool --mode=link cc -DPHP_ATOM_INC -I/usr/src/php/ext/iconv/include -I/usr/src/php/ext/iconv/main -I/usr/src/php/ext/iconv -I/usr/local/include/php -I/usr/local/include/php/main -I/usr/local/include/php/TSRM -I/usr/local/include/php/Zend -I/usr/local/include/php/ext -I/usr/local/include/php/ext/date/lib  -DHAVE_CONFIG_H  -I/usr/include  -L/usr/lib -o iconv.la -export-dynamic -avoid-version -prefer-pic -module -rpath /usr/src/php/ext/iconv/modules  iconv.lo 
cc -shared  .libs/iconv.o  -L/usr/lib  -Wl,-soname -Wl,iconv.so -o .libs/iconv.so
creating iconv.la
(cd .libs && rm -f iconv.la && ln -s ../iconv.la iconv.la)
/bin/bash /usr/src/php/ext/iconv/libtool --mode=install cp ./iconv.la /usr/src/php/ext/iconv/modules
cp ./.libs/iconv.so /usr/src/php/ext/iconv/modules/iconv.so
cp ./.libs/iconv.lai /usr/src/php/ext/iconv/modules/iconv.la
PATH="$PATH:/sbin" ldconfig -n /usr/src/php/ext/iconv/modules
----------------------------------------------------------------------
Libraries have been installed in:
   /usr/src/php/ext/iconv/modules

If you ever happen to want to link against installed libraries
in a given directory, LIBDIR, you must either use libtool, and
specify the full pathname of the library, or use the `-LLIBDIR'
flag during linking and do at least one of the following:
   - add LIBDIR to the `LD_LIBRARY_PATH' environment variable
     during execution
   - add LIBDIR to the `LD_RUN_PATH' environment variable
     during linking
   - use the `-Wl,--rpath -Wl,LIBDIR' linker flag
   - have your system administrator add LIBDIR to `/etc/ld.so.conf'

See any operating system documentation about shared libraries for
more information, such as the ld(1) and ld.so(8) manual pages.
----------------------------------------------------------------------

Build complete.
Don't forget to run 'make test'.

Installing shared extensions:     /usr/local/lib/php/extensions/no-debug-non-zts-20160303/
Installing header files:          /usr/local/include/php/

warning: iconv (iconv.so) is already loaded!

find . -name \*.gcno -o -name \*.gcda | xargs rm -f
find . -name \*.lo -o -name \*.o | xargs rm -f
find . -name \*.la -o -name \*.a | xargs rm -f
find . -name \*.so | xargs rm -f
find . -name .libs -a -type d|xargs rm -rf
rm -f libphp.la       modules/* libs/*
Configuring for:
PHP Api Version:         20160303
Zend Module Api No:      20160303
Zend Extension Api No:   320160303
checking for grep that handles long lines and -e... /bin/grep
checking for egrep... /bin/grep -E
checking for a sed that does not truncate output... /bin/sed
checking for cc... cc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables... 
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether cc accepts -g... yes
checking for cc option to accept ISO C89... none needed
checking how to run the C preprocessor... cc -E
checking for icc... no
checking for suncc... no
checking whether cc understands -c and -o together... yes
checking for system library directory... lib
checking if compiler supports -R... no
checking if compiler supports -Wl,-rpath,... yes
checking build system type... x86_64-pc-linux-gnu
checking host system type... x86_64-pc-linux-gnu
checking target system type... x86_64-pc-linux-gnu
checking for PHP prefix... /usr/local
checking for PHP includes... -I/usr/local/include/php -I/usr/local/include/php/main -I/usr/local/include/php/TSRM -I/usr/local/include/php/Zend -I/usr/local/include/php/ext -I/usr/local/include/php/ext/date/lib
checking for PHP extension directory... /usr/local/lib/php/extensions/no-debug-non-zts-20160303
checking for PHP installed headers prefix... /usr/local/include/php
checking if debug is enabled... no
checking if zts is enabled... no
checking for re2c... re2c
checking for re2c version... 0.13.5 (ok)
checking for gawk... no
checking for nawk... nawk
checking if nawk is broken... no
checking for mcrypt support... yes, shared
checking for libmcrypt version... >= 2.5.6
checking for mcrypt_module_open in -lmcrypt... no
checking for mcrypt_module_open in -lmcrypt... yes
checking for ld used by cc... /usr/bin/ld
checking if the linker (/usr/bin/ld) is GNU ld... yes
checking for /usr/bin/ld option to reload object files... -r
checking for BSD-compatible nm... /usr/bin/nm -B
checking whether ln -s works... yes
checking how to recognize dependent libraries... pass_all
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking dlfcn.h usability... yes
checking dlfcn.h presence... yes
checking for dlfcn.h... yes
checking the maximum length of command line arguments... 1572864
checking command to parse /usr/bin/nm -B output from cc object... ok
checking for objdir... .libs
checking for ar... ar
checking for ranlib... ranlib
checking for strip... strip
checking if cc supports -fno-rtti -fno-exceptions... no
checking for cc option to produce PIC... -fPIC
checking if cc PIC flag -fPIC works... yes
checking if cc static flag -static works... yes
checking if cc supports -c -o file.o... yes
checking whether the cc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes
checking whether -lc should be explicitly linked in... no
checking dynamic linker characteristics... GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking whether stripping libraries is possible... yes
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... yes
checking whether to build static libraries... no

creating libtool
appending configuration tag "CXX" to libtool
configure: creating ./config.status
config.status: creating config.h
/bin/bash /usr/src/php/ext/mcrypt/libtool --mode=compile cc -DZEND_ENABLE_STATIC_TSRMLS_CACHE=1 -I. -I/usr/src/php/ext/mcrypt -DPHP_ATOM_INC -I/usr/src/php/ext/mcrypt/include -I/usr/src/php/ext/mcrypt/main -I/usr/src/php/ext/mcrypt -I/usr/local/include/php -I/usr/local/include/php/main -I/usr/local/include/php/TSRM -I/usr/local/include/php/Zend -I/usr/local/include/php/ext -I/usr/local/include/php/ext/date/lib  -DHAVE_CONFIG_H     -c /usr/src/php/ext/mcrypt/mcrypt.c -o mcrypt.lo 
/bin/bash /usr/src/php/ext/mcrypt/libtool --mode=compile cc -DZEND_ENABLE_STATIC_TSRMLS_CACHE=1 -I. -I/usr/src/php/ext/mcrypt -DPHP_ATOM_INC -I/usr/src/php/ext/mcrypt/include -I/usr/src/php/ext/mcrypt/main -I/usr/src/php/ext/mcrypt -I/usr/local/include/php -I/usr/local/include/php/main -I/usr/local/include/php/TSRM -I/usr/local/include/php/Zend -I/usr/local/include/php/ext -I/usr/local/include/php/ext/date/lib  -DHAVE_CONFIG_H     -c /usr/src/php/ext/mcrypt/mcrypt_filter.c -o mcrypt_filter.lo 
mkdir .libs
mkdir .libs
mkdir: cannot create directory '.libs': File exists
 cc -DZEND_ENABLE_STATIC_TSRMLS_CACHE=1 -I. -I/usr/src/php/ext/mcrypt -DPHP_ATOM_INC -I/usr/src/php/ext/mcrypt/include -I/usr/src/php/ext/mcrypt/main -I/usr/src/php/ext/mcrypt -I/usr/local/include/php -I/usr/local/include/php/main -I/usr/local/include/php/TSRM -I/usr/local/include/php/Zend -I/usr/local/include/php/ext -I/usr/local/include/php/ext/date/lib -DHAVE_CONFIG_H -c /usr/src/php/ext/mcrypt/mcrypt_filter.c  -fPIC -DPIC -o .libs/mcrypt_filter.o
 cc -DZEND_ENABLE_STATIC_TSRMLS_CACHE=1 -I. -I/usr/src/php/ext/mcrypt -DPHP_ATOM_INC -I/usr/src/php/ext/mcrypt/include -I/usr/src/php/ext/mcrypt/main -I/usr/src/php/ext/mcrypt -I/usr/local/include/php -I/usr/local/include/php/main -I/usr/local/include/php/TSRM -I/usr/local/include/php/Zend -I/usr/local/include/php/ext -I/usr/local/include/php/ext/date/lib -DHAVE_CONFIG_H -c /usr/src/php/ext/mcrypt/mcrypt.c  -fPIC -DPIC -o .libs/mcrypt.o
/bin/bash /usr/src/php/ext/mcrypt/libtool --mode=link cc -DPHP_ATOM_INC -I/usr/src/php/ext/mcrypt/include -I/usr/src/php/ext/mcrypt/main -I/usr/src/php/ext/mcrypt -I/usr/local/include/php -I/usr/local/include/php/main -I/usr/local/include/php/TSRM -I/usr/local/include/php/Zend -I/usr/local/include/php/ext -I/usr/local/include/php/ext/date/lib  -DHAVE_CONFIG_H     -o mcrypt.la -export-dynamic -avoid-version -prefer-pic -module -rpath /usr/src/php/ext/mcrypt/modules  mcrypt.lo mcrypt_filter.lo -lmcrypt
cc -shared  .libs/mcrypt.o .libs/mcrypt_filter.o  /usr/lib/libmcrypt.so  -Wl,-soname -Wl,mcrypt.so -o .libs/mcrypt.so
creating mcrypt.la
(cd .libs && rm -f mcrypt.la && ln -s ../mcrypt.la mcrypt.la)
/bin/bash /usr/src/php/ext/mcrypt/libtool --mode=install cp ./mcrypt.la /usr/src/php/ext/mcrypt/modules
cp ./.libs/mcrypt.so /usr/src/php/ext/mcrypt/modules/mcrypt.so
cp ./.libs/mcrypt.lai /usr/src/php/ext/mcrypt/modules/mcrypt.la
PATH="$PATH:/sbin" ldconfig -n /usr/src/php/ext/mcrypt/modules
----------------------------------------------------------------------
Libraries have been installed in:
   /usr/src/php/ext/mcrypt/modules

If you ever happen to want to link against installed libraries
in a given directory, LIBDIR, you must either use libtool, and
specify the full pathname of the library, or use the `-LLIBDIR'
flag during linking and do at least one of the following:
   - add LIBDIR to the `LD_LIBRARY_PATH' environment variable
     during execution
   - add LIBDIR to the `LD_RUN_PATH' environment variable
     during linking
   - use the `-Wl,--rpath -Wl,LIBDIR' linker flag
   - have your system administrator add LIBDIR to `/etc/ld.so.conf'

See any operating system documentation about shared libraries for
more information, such as the ld(1) and ld.so(8) manual pages.
----------------------------------------------------------------------

Build complete.
Don't forget to run 'make test'.

Installing shared extensions:     /usr/local/lib/php/extensions/no-debug-non-zts-20160303/
/usr/local/bin/docker-php-ext-enable: 108: /usr/local/bin/docker-php-ext-enable: cannot create /conf.d/docker-php-ext-mcrypt.ini: Directory nonexistent
Exited with code 123 

Please support me to resolve this problem.Thank you so much !

[mikebarlow]

We started getting the same error this morning with our CircleCI builds. Ours was failing to install soap extension.

Installing shared extensions: /usr/local/lib/php/extensions/no-debug-non-zts-20170718/ /usr/local/bin/docker-php-ext-enable: 108: /usr/local/bin/docker-php-ext-enable: cannot create /conf.d/docker-php-ext-soap.ini: Directory nonexistent Exited with code 123

Everything was working fine yesterday and there has been no changes to our CircleCI config at all.

[mrsimonbennett]

I am also experiencing the same issue

[hairmare]

This seems to be a side effect of #740. It looks like $PHP_INI_DIR used there isn't defined where it's needed. You might be able to work around this by setting PHP_INI_DIR=/etc before running docker-php-ext-enable.
A proper fix could use ${PHP_INI_DIR:-/etc} to ensure that the env variable always has a proper default.

[Rittyan]

I got this issue while using circleCI.
It seems that there is not keeping environment variables when using sudo.
In my case, this issue has been resolved by adding -E option to sudo command.

sudo -E docker-php-ext-install pdo_mysql

[hairmare]

Oh, sudo seems to be the real culprit. You could also just not use sudo since the build steps are most likely already running as root. The following should work fine:

FROM php:latest

RUN apt-get install -y \
      libfreetype6-dev \
      libjpeg62-turbo-dev \
      libmcrypt-dev \
      libpng12-dev \
 && docker-php-ext-install -j$(nproc) \
      iconv \
      mcrypt \
 && docker-php-ext-configure \
      gd \
        --with-freetype-dir=/usr/include/ \
        --with-jpeg-dir=/usr/include/ \
 && docker-php-ext-install -j$(nproc) \
      gd \
      pdo_mysql

[inxilpro]

I can also confirm that adding -E to sudo calls in CircleCI seems to address the issue for me.

[jarleriksen]

sudo -E seems to be addressing my issues as well. If you are using CircleCI you have to run the commands as sudo.

[mikebarlow]

Adding -E still did not work for me, did people add anything else to their circleci config to get it work on simply the -E flag?

[mikebarlow]

Found my issue, I had PHP_INI_DIR constant set in my environment section from a suggestion above. Removing that and adding only -E flag has made my builds now work.

[Daniel-Griffiths]

Adding -E to the sudo command worked for me 😄

[kristof-siket]

-E also worked fine for me :) thanks a lot!

[thomasxu9001]

Adding -E also worked fine for me :) thanks a lot!