NextFlow Example

This repo demonstrates a simple ML pipeline built with NextFlow. It performs hyper-parameter tuning, selects the optimal model, and generates an analysis report.

Dependencies

This pipeline requires NextFlow and Docker to be installed:

• Install NextFlow.
• Install Docker.

Build

For the respective execution environment, you most likely will have to create an additional nextflow.config file that mounts the environment's root directory in the Docker container. For instance, the two examples below mount the necessary root directories for executing the pipeline on macOS and Github Actions runners.

macOS

nextflow -c nextflow-macos.config run main.nf

Github Actions

nextflow -c nextflow-gh.config run main.nf

Github Actions

The report is built and deployed via Github Actions, demonstrating a simple use-case of NextFlow x Github Actions. Check out the generated report here!