Fixing Existing Chapters of the Devito Book #240
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| # Workflow for checking notebooks in fdm-devito-notebooks are compiling using nbval | |
| name: Jupyter Notebooks | |
| on: | |
| # Trigger the workflow on push or pull request, | |
| # but only for the master branch | |
| push: | |
| branches: | |
| - master | |
| pull_request: | |
| branches: | |
| - master | |
| jobs: | |
| tutorials: | |
| name: ${{ matrix.name }} | |
| runs-on: ${{ matrix.os }} | |
| env: | |
| DEVITO_ARCH: "${{ matrix.compiler }}" | |
| DEVITO_LANGUAGE: ${{ matrix.language }} | |
| DEVITO_BACKEND: "core" | |
| PYTHON_VERSION: "3.9" | |
| RUN_CMD: "" | |
| strategy: | |
| # Prevent all build to stop if a single one fails | |
| fail-fast: false | |
| matrix: | |
| name: [tutos-ubuntu-gcc-py39, | |
| tutos-osx-gcc-py39, | |
| tutos-osx-clang-py39] | |
| include: | |
| - name: tutos-ubuntu-gcc-py39 | |
| os: ubuntu-latest | |
| compiler: gcc-9 | |
| language: "openmp" | |
| - name: tutos-osx-gcc-py39 | |
| os: macos-latest | |
| compiler: gcc-9 | |
| language: "openmp" | |
| - name: tutos-osx-clang-py39 | |
| os: macos-latest | |
| compiler: clang | |
| language: "C" | |
| steps: | |
| - name: Checkout devito_book | |
| uses: actions/checkout@v1 | |
| - name: Set up Python 3.9 | |
| uses: actions/setup-python@v1 | |
| with: | |
| python-version: 3.9 | |
| - name: Install compilers for OSX | |
| if: runner.os == 'macOS' | |
| run: | | |
| if [ "${{ matrix.compiler }}" = "gcc-9" ]; then | |
| brew install gcc | |
| else | |
| sudo xcode-select -s /Applications/Xcode_11.app/Contents/Developer | |
| fi | |
| - name: Install dependencies | |
| run: | | |
| python -m pip install --upgrade pip | |
| pip install -e . | |
| pip install matplotlib | |
| pip install --user git+https://github.com/devitocodes/devito.git | |
| - name: Vibration ODE notebooks (1.1 to 1.8) | |
| run: | | |
| $RUN_CMD python -m pytest -W ignore::DeprecationWarning --nbval --cov . --cov-config=.coveragerc --cov-report=xml:vib_coverage.xml $SKIP fdm-devito-notebooks/01_vib/vib_undamped.ipynb | |
| - name: Waves notebooks (2.1 and 2.2) | |
| run: | | |
| $RUN_CMD python -m pytest -W ignore::DeprecationWarning --nbval --cov . --cov-config=.coveragerc --cov-report=xml:waves_coverage.xml $SKIP fdm-devito-notebooks/02_wave/wave1D_fd1.ipynb | |
| - name: Waves notebooks (2.3 to 2.5) | |
| run: | | |
| $RUN_CMD python -m pytest -W ignore::DeprecationWarning --nbval --cov . --cov-config=.coveragerc --cov-report=xml:waves_coverage.xml $SKIP fdm-devito-notebooks/02_wave/wave1D_prog.ipynb | |
| - name: Diffusion notebooks (3.7) | |
| run: | | |
| $RUN_CMD python -m pytest -W ignore::DeprecationWarning --nbval --cov . --cov-config=.coveragerc --cov-report=xml:diffu_coverage.xml $SKIP fdm-devito-notebooks/03_diffu/diffu_rw.ipynb | |
| - name: Advection notebook (4) | |
| run: | | |
| $RUN_CMD python -m pytest -W ignore::DeprecationWarning --nbval --cov . --cov-config=.coveragerc --cov-report=xml:advec_coverage.xml $SKIP fdm-devito-notebooks/04_advec/advec.ipynb | |
| - name: Upload coverage to Codecov | |
| uses: codecov/codecov-action@v1.0.6 | |
| with: | |
| token: ${{ secrets.CODECOV_TOKEN }} | |
| name: ${{ matrix.name }} | |
| file: ./*_coverage.xml | |