Skip to content
This repository has been archived by the owner on Jun 26, 2021. It is now read-only.

Trainer refactoring #66

Merged
merged 92 commits into from
Jun 5, 2019
Merged

Trainer refactoring #66

merged 92 commits into from
Jun 5, 2019

Commits on Feb 22, 2019

  1. Start refactoring trainer and experiment

    @justusschock
    justusschock committed Feb 22, 2019
    Configuration menu
    Copy the full SHA
    0ce953a View commit details
    Browse the repository at this point in the history

Commits on Feb 25, 2019

  1. make new torch trainer and experiment working

    @justusschock
    justusschock committed Feb 25, 2019
    Configuration menu
    Copy the full SHA
    722cd55 View commit details
    Browse the repository at this point in the history

Commits on Feb 26, 2019

  1. Merge branch 'master' into trainer_refactoring

    @justusschock
    justusschock committed Feb 26, 2019
    Configuration menu
    Copy the full SHA
    0ee1c08 View commit details
    Browse the repository at this point in the history

  2. Update pytorch_trainer.py

    @justusschock
    justusschock committed Feb 26, 2019
    Configuration menu
    Copy the full SHA
    1dfa7ce View commit details
    Browse the repository at this point in the history

  3. Update pytorch_trainer.py

    @justusschock
    justusschock committed Feb 26, 2019
    Configuration menu
    Copy the full SHA
    ec0c11a View commit details
    Browse the repository at this point in the history

Commits on Mar 11, 2019

  1. Merge branch 'trainer_refactoring' of https://github.com/justusschock… 

    …/delira into trainer_refactoring
    @mibaumgartner
    mibaumgartner committed Mar 11, 2019
    Configuration menu
    Copy the full SHA
    a4b8743 View commit details
    Browse the repository at this point in the history

  2. First version of auc metric implementation

    @mibaumgartner
    mibaumgartner committed Mar 11, 2019
    Configuration menu
    Copy the full SHA
    151a3df View commit details
    Browse the repository at this point in the history

Commits on Mar 12, 2019

  1. Resolve DImension Error

    @justusschock
    justusschock committed Mar 12, 2019
    Configuration menu
    Copy the full SHA
    da4f474 View commit details
    Browse the repository at this point in the history

  2. Move _is_better_val_score from predictor to abstract trainer

    @justusschock
    justusschock committed Mar 12, 2019
    Configuration menu
    Copy the full SHA
    71387c7 View commit details
    Browse the repository at this point in the history

  3. Fix error in torchvision datasets due to latest torchvision release

    @justusschock
    justusschock committed Mar 12, 2019
    Configuration menu
    Copy the full SHA
    17478ce View commit details
    Browse the repository at this point in the history

  4. Fix error due to missing brackets for file extension checks

    @justusschock
    justusschock committed Mar 12, 2019
    Configuration menu
    Copy the full SHA
    1a8cca0 View commit details
    Browse the repository at this point in the history

  5. Add docstrings

    @justusschock
    justusschock committed Mar 12, 2019
    Configuration menu
    Copy the full SHA
    e467013 View commit details
    Browse the repository at this point in the history

  6. Update pytorch_trainer docstrings

    @justusschock
    justusschock committed Mar 12, 2019
    Configuration menu
    Copy the full SHA
    f23b52a View commit details
    Browse the repository at this point in the history

  7. Merge remote-tracking branch 'upstream/trainer_refactoring' into trai… 

    …ner_refactoring
    @mibaumgartner
    mibaumgartner committed Mar 12, 2019
    Configuration menu
    Copy the full SHA
    af66224 View commit details
    Browse the repository at this point in the history

  8. Finished auc metric and added doc strings

    @mibaumgartner
    mibaumgartner committed Mar 12, 2019
    Configuration menu
    Copy the full SHA
    503ce15 View commit details
    Browse the repository at this point in the history

  9. Added unit test for metric wrapper and auc metric

    @mibaumgartner
    mibaumgartner committed Mar 12, 2019
    Configuration menu
    Copy the full SHA
    1575430 View commit details
    Browse the repository at this point in the history

  10. Remove dummy experiment file

    @mibaumgartner
    mibaumgartner committed Mar 12, 2019
    Configuration menu
    Copy the full SHA
    06a9be9 View commit details
    Browse the repository at this point in the history

  11. Remove todo

    @mibaumgartner
    mibaumgartner committed Mar 12, 2019
    Configuration menu
    Copy the full SHA
    bd25321 View commit details
    Browse the repository at this point in the history

  12. Added docstring

    @mibaumgartner
    mibaumgartner committed Mar 12, 2019
    Configuration menu
    Copy the full SHA
    667733f View commit details
    Browse the repository at this point in the history

  13. Updated docstring

    @mibaumgartner
    mibaumgartner committed Mar 12, 2019
    Configuration menu
    Copy the full SHA
    1c9ace3 View commit details
    Browse the repository at this point in the history

Commits on Mar 13, 2019

  1. Update test_metrics.py

    @justusschock
    justusschock committed Mar 13, 2019
    Configuration menu
    Copy the full SHA
    ec04ddf View commit details
    Browse the repository at this point in the history

  2. Merge branch 'master' into trainer_refactoring

    @justusschock
    justusschock committed Mar 13, 2019
    Configuration menu
    Copy the full SHA
    cd1b686 View commit details
    Browse the repository at this point in the history

  3. Merge pull request #73 from mibaumgartner/trainer_refactoring 

    AUC metric
    @justusschock
    justusschock committed Mar 13, 2019
    Configuration menu
    Copy the full SHA
    775b684 View commit details
    Browse the repository at this point in the history

Commits on Mar 22, 2019

  1. resolve merge conflicts and merge

    @ORippler
    ORippler committed Mar 22, 2019
    Configuration menu
    Copy the full SHA
    59046e4 View commit details
    Browse the repository at this point in the history

  2. update TfExperiment.test, change test signature

    @ORippler
    ORippler committed Mar 22, 2019
    Configuration menu
    Copy the full SHA
    abc91b9 View commit details
    Browse the repository at this point in the history

Commits on Apr 7, 2019

  1. Make consistent logging

    @justusschock
    justusschock committed Apr 7, 2019
    Configuration menu
    Copy the full SHA
    b4c7773 View commit details
    Browse the repository at this point in the history

  2. Continue merging trainers

    @justusschock
    justusschock committed Apr 7, 2019
    Configuration menu
    Copy the full SHA
    85566f6 View commit details
    Browse the repository at this point in the history

  3. update tests

    @justusschock
    justusschock committed Apr 7, 2019
    Configuration menu
    Copy the full SHA
    d43cbc6 View commit details
    Browse the repository at this point in the history

Commits on Apr 9, 2019

  1. fix feed errors by using default placeholder

    @ORippler
    ORippler committed Apr 9, 2019
    Configuration menu
    Copy the full SHA
    5ca4024 View commit details
    Browse the repository at this point in the history

Commits on Apr 16, 2019

  1. Change list outputs to dict outputs

    @justusschock
    justusschock committed Apr 16, 2019
    Configuration menu
    Copy the full SHA
    c645c76 View commit details
    Browse the repository at this point in the history

  2. Change networks to return dicts

    @justusschock
    justusschock committed Apr 16, 2019
    Configuration menu
    Copy the full SHA
    23dd11d View commit details
    Browse the repository at this point in the history

  3. remove duplicate argument in tf trainer

    @justusschock
    justusschock committed Apr 16, 2019
    Configuration menu
    Copy the full SHA
    7fba516 View commit details
    Browse the repository at this point in the history

Commits on May 9, 2019

  1. deprecate models in favor of to be announced repo

    @justusschock
    justusschock committed May 9, 2019
    Configuration menu
    Copy the full SHA
    55c1ed9 View commit details
    Browse the repository at this point in the history

  2. Merge branch 'master' into trainer_refactoring

    @justusschock
    justusschock committed May 9, 2019
    Configuration menu
    Copy the full SHA
    506960b View commit details
    Browse the repository at this point in the history

  3. start updating notebooks

    @justusschock
    justusschock committed May 9, 2019
    Configuration menu
    Copy the full SHA
    444b6b8 View commit details
    Browse the repository at this point in the history

  4. Start Experiment refactoring

    @justusschock
    justusschock committed May 9, 2019
    Configuration menu
    Copy the full SHA
    8c8c9cd View commit details
    Browse the repository at this point in the history

  5. Update Experiment Tests and Fix Bugs

    @justusschock
    justusschock committed May 9, 2019
    Configuration menu
    Copy the full SHA
    3b83c6b View commit details
    Browse the repository at this point in the history

  6. Fix Naming issue 

    Fix naming issue in kfold
    @justusschock
    justusschock committed May 9, 2019
    Configuration menu
    Copy the full SHA
    7f9bea4 View commit details
    Browse the repository at this point in the history

Commits on May 10, 2019

  1. continue test fixing

    @justusschock
    justusschock committed May 10, 2019
    Configuration menu
    Copy the full SHA
    a9760fc View commit details
    Browse the repository at this point in the history

  2. Merge branch 'trainer_refactoring' of https://github.com/justusschock… 

    …/delira into trainer_refactoring
    @justusschock
    justusschock committed May 10, 2019
    Configuration menu
    Copy the full SHA
    c0b7553 View commit details
    Browse the repository at this point in the history

  3. add docstrings

    @justusschock
    justusschock committed May 10, 2019
    Configuration menu
    Copy the full SHA
    23436ed View commit details
    Browse the repository at this point in the history

  4. fix minor bugs, change descriptor during validation phase and introdu… 

    …ce validation frequency
    @justusschock
    justusschock committed May 10, 2019
    Configuration menu
    Copy the full SHA
    e1189b7 View commit details
    Browse the repository at this point in the history

Commits on May 11, 2019

  1. Fix some bugs, torch tests should complete now

    @mibaumgartner
    mibaumgartner committed May 11, 2019
    1 Configuration menu
    Copy the full SHA
    866b0cf View commit details
    Browse the repository at this point in the history

  2. Add resume to tf trainer

    @justusschock
    justusschock committed May 11, 2019
    Configuration menu
    Copy the full SHA
    f189575 View commit details
    Browse the repository at this point in the history

Commits on May 12, 2019

  1. merge master into trainer_refactoring

    @justusschock
    justusschock committed May 12, 2019
    Configuration menu
    Copy the full SHA
    2b56ed4 View commit details
    Browse the repository at this point in the history

  2. fix merge

    @justusschock
    justusschock committed May 12, 2019
    Configuration menu
    Copy the full SHA
    2a5cfb2 View commit details
    Browse the repository at this point in the history

  3. fix indent tf trainer

    @justusschock
    justusschock committed May 12, 2019
    Configuration menu
    Copy the full SHA
    3c48c98 View commit details
    Browse the repository at this point in the history

  4. switch to suitable permutation

    @justusschock
    justusschock committed May 12, 2019
    Configuration menu
    Copy the full SHA
    1053486 View commit details
    Browse the repository at this point in the history

  5. specify data in signature as dict type

    @ORippler
    ORippler committed May 12, 2019
    Configuration menu
    Copy the full SHA
    424318c View commit details
    Browse the repository at this point in the history

  6. switch from list to dicts for tf

    @ORippler
    ORippler committed May 12, 2019
    Configuration menu
    Copy the full SHA
    e9a221d View commit details
    Browse the repository at this point in the history

  7. pep8

    @ORippler
    ORippler committed May 12, 2019
    Configuration menu
    Copy the full SHA
    829e241 View commit details
    Browse the repository at this point in the history

  8. change to dicts

    @ORippler
    ORippler committed May 12, 2019
    Configuration menu
    Copy the full SHA
    6f023a8 View commit details
    Browse the repository at this point in the history

Commits on May 13, 2019

  1. Adress requested changes: update start_epoch for tf_trainer, support … 

    …arbitrary number of metric arguments in predictor and fix type annotation of params in experiment
    @justusschock
    justusschock committed May 13, 2019
    Configuration menu
    Copy the full SHA
    399fd7d View commit details
    Browse the repository at this point in the history

  2. fix indent causing swigpy pickling error

    @justusschock
    justusschock committed May 13, 2019
    Configuration menu
    Copy the full SHA
    3068ab9 View commit details
    Browse the repository at this point in the history

  3. fix tf experiment test and type annotations

    @justusschock
    justusschock committed May 13, 2019
    Configuration menu
    Copy the full SHA
    efa61da View commit details
    Browse the repository at this point in the history

  4. detach network outputs, remove params from test in TF Experiment

    @justusschock
    justusschock committed May 13, 2019
    Configuration menu
    Copy the full SHA
    6a3e5c2 View commit details
    Browse the repository at this point in the history

  5. key 'prediction' to 'pred'

    @ORippler
    ORippler committed May 13, 2019
    Configuration menu
    Copy the full SHA
    a9383de View commit details
    Browse the repository at this point in the history

  6. prediction to pred

    @ORippler
    ORippler committed May 13, 2019
    Configuration menu
    Copy the full SHA
    487b41b View commit details
    Browse the repository at this point in the history

  7. formulate default fn explicitly

    @justusschock
    justusschock committed May 13, 2019
    Configuration menu
    Copy the full SHA
    4e0ff57 View commit details
    Browse the repository at this point in the history

  8. rename argument in docstrings

    @justusschock
    justusschock committed May 13, 2019
    Configuration menu
    Copy the full SHA
    12f4919 View commit details
    Browse the repository at this point in the history

  9. Merge branch 'trainer_refactoring' of https://github.com/justusschock… 

    …/delira into trainer_refactoring
    @justusschock
    justusschock committed May 13, 2019
    Configuration menu
    Copy the full SHA
    de014d7 View commit details
    Browse the repository at this point in the history

  10. revert move to predictions key

    @justusschock
    justusschock committed May 13, 2019
    Configuration menu
    Copy the full SHA
    19c954c View commit details
    Browse the repository at this point in the history

  11. check arrays for zero-size and reshape if necessary

    @justusschock
    justusschock committed May 13, 2019
    Configuration menu
    Copy the full SHA
    fd99cf6 View commit details
    Browse the repository at this point in the history

Commits on May 14, 2019

  1. fix start_epoch

    @justusschock
    justusschock committed May 14, 2019
    Configuration menu
    Copy the full SHA
    3fb15ed View commit details
    Browse the repository at this point in the history

Commits on May 17, 2019

  1. added additional checks

    @justusschock
    justusschock committed May 17, 2019
    Configuration menu
    Copy the full SHA
    562453f View commit details
    Browse the repository at this point in the history

Commits on May 27, 2019

  1. Make dict a lookup config to support nested dicts via nested_get

    @justusschock
    justusschock committed May 27, 2019
    Configuration menu
    Copy the full SHA
    291d89c View commit details
    Browse the repository at this point in the history

  2. Make item concat working for nested dicts

    @justusschock
    justusschock committed May 27, 2019
    Configuration menu
    Copy the full SHA
    a5655d8 View commit details
    Browse the repository at this point in the history

  3. Pin scipy requirement 

    Trixi currently has a problem with their dependencies and imports not matching and thus breaking. Should be fixed for now by pinning scipy (we don't use the other problematic dependencies)
    @justusschock
    justusschock committed May 27, 2019
    Configuration menu
    Copy the full SHA
    f4531f5 View commit details
    Browse the repository at this point in the history

  4. Remove unnecessary imports

    @justusschock
    justusschock committed May 27, 2019
    Configuration menu
    Copy the full SHA
    6f26eda View commit details
    Browse the repository at this point in the history

  5. Merge branch 'trainer_refactoring' of https://github.com/justusschock… 

    …/delira into trainer_refactoring
    @justusschock
    justusschock committed May 27, 2019
    Configuration menu
    Copy the full SHA
    45cedd4 View commit details
    Browse the repository at this point in the history

  6. Merge branch 'master' into trainer_refactoring

    @justusschock
    justusschock committed May 27, 2019
    Configuration menu
    Copy the full SHA
    1babcb4 View commit details
    Browse the repository at this point in the history

  7. Update docs

    @justusschock
    justusschock committed May 27, 2019
    Configuration menu
    Copy the full SHA
    36ed4a0 View commit details
    Browse the repository at this point in the history

Commits on Jun 1, 2019

  1. Add kwargs in predictor for prepare_batch_fn

    @mibaumgartner
    mibaumgartner committed Jun 1, 2019
    Configuration menu
    Copy the full SHA
    7c2b81a View commit details
    Browse the repository at this point in the history

Commits on Jun 3, 2019

  1. Convert batchdict back to numpy for metric calculation and introduce … 

    …lazy behavior
    @justusschock
    justusschock committed Jun 3, 2019
    Configuration menu
    Copy the full SHA
    47e2556 View commit details
    Browse the repository at this point in the history

  2. Merged origin commits into offline branch

    @justusschock
    justusschock committed Jun 3, 2019
    Configuration menu
    Copy the full SHA
    44ef716 View commit details
    Browse the repository at this point in the history

  3. fix generator behavior

    @justusschock
    justusschock committed Jun 3, 2019
    Configuration menu
    Copy the full SHA
    b510ffb View commit details
    Browse the repository at this point in the history

  4. make experiment.test return the first generator item

    @justusschock
    justusschock committed Jun 3, 2019
    Configuration menu
    Copy the full SHA
    13d3adb View commit details
    Browse the repository at this point in the history

  5. Merge branch 'master' into trainer_refactoring

    @justusschock
    justusschock committed Jun 3, 2019
    Configuration menu
    Copy the full SHA
    22c7113 View commit details
    Browse the repository at this point in the history

  6. add kwargs to overwritten predict_data_mgr functions

    @justusschock
    justusschock committed Jun 3, 2019
    Configuration menu
    Copy the full SHA
    d123c1e View commit details
    Browse the repository at this point in the history

Commits on Jun 4, 2019

  1. merge Parallel_master

    @justusschock
    justusschock committed Jun 4, 2019
    Configuration menu
    Copy the full SHA
    7007cd7 View commit details
    Browse the repository at this point in the history

  2. PEP-8 Auto-Fix

    Travis AutoPEP8 Fixes committed Jun 4, 2019
    Configuration menu
    Copy the full SHA
    bc32d5c View commit details
    Browse the repository at this point in the history

  3. Merge GAN

    @justusschock
    justusschock committed Jun 4, 2019
    Configuration menu
    Copy the full SHA
    b63587c View commit details
    Browse the repository at this point in the history

  4. Merge PEP-8 Autofix

    @justusschock
    justusschock committed Jun 4, 2019
    Configuration menu
    Copy the full SHA
    3325ba8 View commit details
    Browse the repository at this point in the history

  5. Add style fixes and common function to search for previous checkpoints

    @justusschock
    justusschock committed Jun 4, 2019
    Configuration menu
    Copy the full SHA
    2e264f5 View commit details
    Browse the repository at this point in the history

  6. fix infinite recursion by hard type checking instead of instance chec… 

    …king
    @justusschock
    justusschock committed Jun 4, 2019
    Configuration menu
    Copy the full SHA
    4ef61c9 View commit details
    Browse the repository at this point in the history

  7. fix pep8

    @justusschock
    justusschock committed Jun 4, 2019
    Configuration menu
    Copy the full SHA
    27fd0e4 View commit details
    Browse the repository at this point in the history

  8. Remove TrixiExperiment as Experiment Baseclass

    @justusschock
    justusschock committed Jun 4, 2019
    Configuration menu
    Copy the full SHA
    bcee731 View commit details
    Browse the repository at this point in the history

  9. correct indent in tf trainer

    @justusschock
    justusschock committed Jun 4, 2019
    Configuration menu
    Copy the full SHA
    ac1c6e9 View commit details
    Browse the repository at this point in the history

Commits on Jun 5, 2019

  1. shallow copy 

    Make shallow copy of batchdict to retain keys, which might get popped in `prepare_batch`
    @justusschock
    justusschock committed Jun 5, 2019
    Configuration menu
    Copy the full SHA
    6b9ac0d View commit details
    Browse the repository at this point in the history

  2. initialize uninitialized members in TfExeriment.Test

    @justusschock
    justusschock committed Jun 5, 2019
    Configuration menu
    Copy the full SHA
    12ac946 View commit details
    Browse the repository at this point in the history

  3. remove param argument from test for TfExperiment.test

    @justusschock
    justusschock committed Jun 5, 2019
    Configuration menu
    Copy the full SHA
    5077864 View commit details
    Browse the repository at this point in the history

  4. add predictor to docs

    @justusschock
    justusschock committed Jun 5, 2019
    Configuration menu
    Copy the full SHA
    74313e1 View commit details
    Browse the repository at this point in the history