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Add better functionality to the Tier system used by the Accession file. #105

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grabear opened this issue Oct 17, 2017 · 0 comments
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@grabear
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grabear commented Oct 17, 2017

For the master accession files, we can control the workflow by giving the end user access to
priority labels that we define. For instance...

Our default set of tier labels:

  • Priority Levels:
    • Higher priority genes are put through the pipeline first.

    • Numerical ranges from 1 to infinity

      • 0 = Do not execute
      • 1 = High Priority
      • 100000000 = Low Priority
    • Alternatively allow the user to create a YAML file

      • This allows for strings in the .csv files
      • For instance:
       Opioid: 1
       Alcohol: 2
       Cocaine: 3
       Opioid/Cocaine: 4
    • String levels

      • "Skip" could actually skip over genes that don't need to be analyzed right away
      • "Isoform-1-Insert-Gene-Here" could be used for identifying isoforms
        • Isoform-0-HTR1A (the desired gene to analyze)
        • Isoform-1-HTR1A
       Isoform-0-HTR1A: 1
       Isoform-1-HTR1A:  "Skip"

This could also be very useful when we get to parsing updated HGNC files directly.

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