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Re-address the current ways that the various Orthologs modules handle the data/databases. #106

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grabear opened this issue Oct 18, 2017 · 1 comment

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@grabear
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grabear commented Oct 18, 2017

Problem:

When using CompGenObjects, the initial runtime for a full file can take up to 5 minutes.

Solution:

In order to speed this up, it would be good to add the entire csv file to a database as is. After CompGenObjects has created its pre/post blast dictionaries, it would be good to store these there too. The duplicates dictionary takes the longest amount of time.

@grabear grabear self-assigned this Oct 18, 2017
@grabear grabear added this to the Official project release milestone Oct 18, 2017
@sdhutchins sdhutchins added this to To Do in Official Release Nov 14, 2017
@grabear grabear changed the title Use sqlite database for Master Accession file. Re-address the current was that the various Orthologs modules handle the data/databases. May 20, 2019
@grabear grabear changed the title Re-address the current was that the various Orthologs modules handle the data/databases. Re-address the current ways that the various Orthologs modules handle the data/databases. May 20, 2019
@grabear
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grabear commented May 20, 2019

We are already using sqlite databases.

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