Step 3: Filter and report the incorrect directory in hightlight section #252
Conversation
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
In step 3 of Variant calling in the section called filtering beginning at line 265 on the github script, where we compare the quality of the of the variants called before and after filtering, the directory name is wrong when running the unfiltered variants. Line 274 currently has /bcf/ instead /vcf/.
🆗 Pre-flight checks passed 😃This pull request has been checked and contains no modified workflow files, spoofing, or invalid commits. It should be safe to Approve and Run the workflows that need maintainer approval. |
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
Add this suggestion to a batch that can be applied as a single commit.
This suggestion is invalid because no changes were made to the code.
Suggestions cannot be applied while the pull request is closed.
Suggestions cannot be applied while viewing a subset of changes.
Only one suggestion per line can be applied in a batch.
Add this suggestion to a batch that can be applied as a single commit.
Applying suggestions on deleted lines is not supported.
You must change the existing code in this line in order to create a valid suggestion.
Outdated suggestions cannot be applied.
This suggestion has been applied or marked resolved.
Suggestions cannot be applied from pending reviews.
Suggestions cannot be applied on multi-line comments.
Suggestions cannot be applied while the pull request is queued to merge.
Suggestion cannot be applied right now. Please check back later.
In step 3 of Variant calling in the section called filtering beginning at line 265 on the github script, where we compare the quality of the of the variants called before and after filtering, the directory name is wrong when running the unfiltered variants. Line 274 currently has /bcf/ instead /vcf/.
If this pull request addresses an open issue on the repository, please add 'Closes #NN' below, where NN is the issue number.
Please briefly summarise the changes made in the pull request, and the reason(s) for making these changes.
If any relevant discussions have taken place elsewhere, please provide links to these.
For more guidance on how to contribute changes to a Carpentries project, please review the Contributing Guide and Code of Conduct.
Please keep in mind that lesson Maintainers are volunteers and it may be some time before they can respond to your contribution. Although not all contributions can be incorporated into the lesson materials, we appreciate your time and effort to improve the curriculum. If you have any questions about the lesson maintenance process or would like to volunteer your time as a contribution reviewer, please contact The Carpentries Team at team@carpentries.org.