v1.2024.02-1

Minor Updates:

• fixed some bugs introduced in 2024.1
• Databases generated and uploaded to Zenodo

v1.2024.01-1

Major Updates:

• Support for mOTUs markers (v2, 2.5, 3, +)
• Support for MetaPhlAn SGB-level markers (mpa_vJun23_CHOCOPhlAnSGB_202307, mpa_vOct22_CHOCOPhlAnSGB_202212, mpa_vJun23_CHOCOPhlAnSGB_202307, +)
• Database has improved footprint, structure, integrity check

Minor Updates:

• Rewrite to support custom databases in the future
• Changes in command options

v1.2023.04-1

Performance

• Reverted the switch to pysam during bam-to-pileup conversion, as it was fine with smaller test datasets but significantly slower and RAM hungrier than the cli samtools install. Improved performance of conversion step.

v1.2023.03-3

Features

• Support for pypi installation
• [pending] preparation for bioconda installation

Bugfixes

• Bugfixes of Python 3.9 rewrite
• Fixed tmp dir specification

Other

• Output structure of samestr convert now follows the style of the other commands

v1.2023.02-1

Features

• This is a rewrite of SameStr in Python 3.9
• Native support for MetaPhlAn v3 and v4 objects and profile formats, addresses #5

v1.2022.12-1

Features

• Workaround for compatibility with MetaPhlAn v3 and v4

Bugfixes

• Fixed min. coverage calculation (now greater or equal, not greater)
• Clarified documentation of MetaPhlAn v3/v4 compatibility workaround

Other

• Updated citation

v1.2022.05-1

Features

• Flexible input of executables

Bugfixes

• Explicit use of python version
• Corrected documentation
• Installation with proper file permissions