v0.0.7

Changes

• Use compartment tables as basis of preset joins (@d33bs via #183)
• Add order to limit and offset queries for deterministic results (@d33bs via #182)
• Bump idna from 3.6 to 3.7 (@dependabot via #186)
• Enable Python 3.12 compatibility through dependency-based updates (@d33bs via #174)
• Bump scipy from 1.9.3 to 1.10.0 (@dependabot via #173)
• Add python 3.11 to automated tests (@d33bs via #172)
• Remove poetry lockfile to better project testing with scheduled trigger (@d33bs via #170)
• Changing python's upper limit version to python<3.12 (@axiomcura via #158)

v0.0.6

Changes

• Move citation.cff validation to pre-commit check (@d33bs via #165)
• Remove duplicative all-at-once concatenate with join operations (@d33bs via #168)
• Add and apply pre-commit poetry checks (@d33bs via #164)

v0.0.5

Changes

• Set upper limit on DuckDB version (<0.10.0) to avoid Arrow errors (@d33bs via #166)
• Add weekly testing for preventative awareness of external changes (@d33bs via #167)
• Bump cryptography from 42.0.2 to 42.0.4 (@dependabot via #162)
• Bump cryptography from 41.0.6 to 42.0.2 (@dependabot via #161)
• Add pytest warning filters for pkg_resource and sqlalchemy (@d33bs, @kenibrewer via #153)
• Fix source filename ingest for IN Carta data with spaces and inconsistent casing (@d33bs via #151)
• Add security community health file (@d33bs via #147)

v0.0.4

Changes

• Add IN Carta preset and related compatibility changes + testing (@d33bs via #145)
• Move from dev-dependencies to poetry group specification (@d33bs via #146)
• Define and demonstrate data transform types within documentation (@d33bs via #142)
• Bump jinja2 from 3.1.2 to 3.1.3 (@dependabot via #144)
• Add IN Carta test data from Colas Lab (@d33bs via #141)
• Increase documentation on cloud-based data sources (@d33bs via #138)
• Move PR template credit to un-rendered HTML comment (@d33bs via #139)
• Add project title definition (@d33bs via #135)
• Add version metadata to CytoTable Parquet output (@d33bs via #134)
• Add poetry dynamic versioning and update release process (@d33bs via #132)
• Bump paramiko from 3.1.0 to 3.4.0 (@dependabot via #133)
• Bump cryptography from 41.0.4 to 41.0.6 (@dependabot via #131)
• Bump werkzeug from 2.2.3 to 3.0.1 (@dependabot via #127)
• Bump flask from 2.2.3 to 2.2.5 (@dependabot via #130)
• Bump requests from 2.28.2 to 2.31.0 (@dependabot via #129)
• Bump cryptography from 40.0.1 to 41.0.4 (@dependabot via #128)
• Bump certifi from 2022.12.7 to 2023.7.22 (@dependabot via #126)
• Bump urllib3 from 1.26.15 to 1.26.18 (@dependabot via #125)
• Bump pygments from 2.14.0 to 2.15.0 (@dependabot via #124)
• Bump PyArrow dependency for CVE-2023-47248 (@d33bs via #123)

v0.0.3

Changes

• Patch v0.0.3 (@d33bs via #121)
• Add related software + paper references to citations (@d33bs via #120)
• Update readme with additional installation notes (@d33bs via #119)
• Move to offset-based joins (@d33bs via #113)
• Add PR author mentions to release drafts (@d33bs via #118)
• Fix PyPI readme image reference (@d33bs via #117)
• Use Parsl NoDataFlowKernelError for detecting existing Parsl configurations (@d33bs via #112)
• Enable DuckDB >= v0.8.0 (@d33bs via #114)

v0.0.2

Changes

• Update to v0.0.2 with related automated workflows (#108)
• Correct SQL preset join references (#106)
• Move to Parsl HighThroughputExecutor for default workflow execution (#97)
• Add exception on existing dest_path to avoid unsafe operation (#104)
• Fix GitHub Actions version specification typo (#103)
• Update dependencies (#101)
• Remove dead code for Dagger-based testing (#99)
• Update test for pandas 2.0.3 compatibility (#98)
• Close database connections (#95)
• Reuse existing Parsl configurations (#93)
• Update DuckDB to ^v0.8.0 (#92)
• Add PyArrow memory mapping improvements and allocator documentation (#91)
• Expand source and destination paths (#89)
• Move to PyArrow parquet writer for data extraction (#87)
• Adding Legacy Presets for CytoTable (#46)
• Add SQLite affinity type synonym matching for _sqlite_mixed_type_query_to_parquet (#84)
• Resolve test_convert_s3_path_sqlite test failures with explicit local_cache_dir (#83)
• Add SQLite mixed-type compatibility for _get_table_columns_and_types (#82)
• Add macos testing (#80)
• Change drop_nulls default in convert() to false (#78)
• Fix test_convert_s3_path_sqlite test failure inconsistencies (#79)
• Add output data type casting controls for integers and floats (#49)
• Add SQLite mixed-type data handling capabilities (#50)
• Add logo png (#73)
• Fix link in README (#72)
• logo (#71)
• Enable preset overrides (#65)

v0.0.1

An initial release of CytoTable.