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Remove R
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tomyun committed Apr 9, 2024
1 parent b35c613 commit 01fb861
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36 changes: 0 additions & 36 deletions .binder/Dockerfile
Original file line number Diff line number Diff line change
Expand Up @@ -14,14 +14,6 @@ USER root
# Check https://julialang.org/downloads/
ARG julia_version="1.10.2"

# R pre-requisites
RUN apt-get update --yes && \
apt-get install --yes --no-install-recommends \
fonts-dejavu \
gfortran \
gcc && \
apt-get clean && rm -rf /var/lib/apt/lists/*

# Julia dependencies
# install Julia packages in /opt/julia instead of ${HOME}
ENV JULIA_DEPOT_PATH=/opt/julia \
Expand Down Expand Up @@ -55,34 +47,6 @@ RUN mkdir /etc/julia && \

USER ${NB_UID}

# R packages including IRKernel which gets installed globally.
# r-e1071: dependency of the caret R package
RUN mamba install --yes \
'r-base' \
'r-caret' \
'r-crayon' \
'r-devtools' \
'r-e1071' \
'r-forecast' \
'r-hexbin' \
'r-htmltools' \
'r-htmlwidgets' \
'r-irkernel' \
'r-nycflights13' \
'r-randomforest' \
'r-rcurl' \
'r-rmarkdown' \
'r-rodbc' \
'r-rsqlite' \
'r-shiny' \
'r-tidymodels' \
'r-tidyverse' \
'rpy2' \
'unixodbc' && \
mamba clean --all -f -y && \
fix-permissions "${CONDA_DIR}" && \
fix-permissions "/home/${NB_USER}"

# Add Julia packages.
# Install IJulia as jovyan and then move the kernelspec out
# to the system share location. Avoids problems with runtime UID change not
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