GitHub - crazypegasusvv/Needleman-Wunsh_algorithm: Project in Python language for Bioinformatics course starting october '20, aimed at implementing Needleman-Wunsh algorithm.

Run the needleman - wunsch algorithm to find the alignments

python run.py -a d1.txt -b d2.txt -c config.txt -o nw_output.txt
Run perf_ssr module to get the tandem repeats in d1.txt (ref sequence)

perf -i d1.txt -u 2

Output will be in d1_perf.tsv
Run the readFRMnw_output.py

python readFRMnw_output.py

Output will be in the Frame_Shift.txt

Name		Name	Last commit message	Last commit date
Latest commit History 17 Commits
Frame_Shift.txt		Frame_Shift.txt
README.md		README.md
cell.py		cell.py
config.py		config.py
config.txt		config.txt
constants.py		constants.py
d1.txt		d1.txt
d1_perf.tsv		d1_perf.tsv
d2.txt		d2.txt
direction.py		direction.py
fasta_reader.py		fasta_reader.py
input_data_validator.py		input_data_validator.py
needleman_wunsch_algorithm.py		needleman_wunsch_algorithm.py
needleman_wunsch_algorithm_config.py		needleman_wunsch_algorithm_config.py
nw_output.txt		nw_output.txt
readFRMnw_output.py		readFRMnw_output.py
run.py		run.py
try_parse.py		try_parse.py

crazypegasusvv/Needleman-Wunsh_algorithm