Skip to content

Commit

Permalink
re-instating lineages B.1.214.1 and B.1.214.2
Browse files Browse the repository at this point in the history
  • Loading branch information
@aineniamh
aineniamh committed Mar 22, 2021
1 parent 24a7ef9 commit b97e5da
Show file tree
Hide file tree
Showing 2 changed files with 232 additions and 119 deletions.
4 changes: 2 additions & 2 deletions lineage_notes.txt
View file
Original file line number Diff line number Diff line change
Expand Up @@ -681,6 +681,8 @@ B.1.211 Belgium/ Luxembourg lineage
B.1.212 South American lineage
B.1.213 Polish lineage
B.1.214 DRC/ Congo lineage
B.1.214.1 Congo/ France lineage
B.1.214.2 European lineage with sequences from Belgium, Denmark, Switzerland and Mayotte. It has a number of key spike mutations and a 9bp spike insertion.
B.1.215 Scottish lineage
B.1.218 Swiss lineage
B.1.219 Suriname lineage
Expand Down Expand Up @@ -1416,8 +1418,6 @@ AS.2 Alias of B.1.1.317.2, UK lineage
*B.1.204 Withdrawn: Reassigned in the current tree. USA lineage
*B.1.207 Withdrawn: USA lineage (TX)
*B.1.209 Withdrawn: Small Scottish lineage
*B.1.214.1 Withdrawn: Congo/ France lineage
*B.1.214.2 Withdrawn: European lineage with sequences from Belgium, Denmark, Switzerland and Mayotte. It has a number of key spike mutations and a 9bp spike insertion.
*B.1.216 Withdrawn: USA lineage
*B.1.217 Withdrawn: Reassigned in the current tree. Indian lineage Reassigned from B.1.80, split this assignment
*B.1.226 Withdrawn: Reassigned in the current tree. Equatorial Guinea lineage
Expand Down
347 changes: 230 additions & 117 deletions lineages.csv
View file
Original file line number Diff line number Diff line change
Expand Up @@ -353103,136 +353103,249 @@ Poland/PL_MCB_98/2020,B.1.213
Poland/PL_MCB_85/2020,B.1.213
Poland/PL_MCB_69/2020,B.1.213
Luxembourg/LNS3498953/2020,B.1.213
Belgium/Jessa_55-2105-000845/2021,B.1.214
Belgium/Jessa_21-2106-000007a/2021,B.1.214
Belgium/Jessa_55-2105-001118/2021,B.1.214
Belgium/Jessa_55-2105-001532/2021,B.1.214
Belgium/AZDelta2102-15402/2021,B.1.214
Belgium/AZDelta2102-15416/2021,B.1.214
Belgium/AZDelta2103-10718/2021,B.1.214
Denmark/DCGC-41529/2021,B.1.214
Belgium/rega-2008/2021,B.1.214
Belgium/ULG-11631/2021,B.1.214
Belgium/rega-2180/2021,B.1.214
Belgium/rega-2154/2021,B.1.214
Belgium/Jessa_11-2104-005969/2021,B.1.214
Belgium/Jessa_11-2104-005968/2021,B.1.214
Belgium/rega-2712/2021,B.1.214
Belgium/Jessa_55-2105-000780/2021,B.1.214
Mayotte/IPP00850/2021,B.1.214
England/PHEC-1555C0/2021,B.1.214
France/un-21012260313/2021,B.1.214
Switzerland/GE-33171956/2021,B.1.214
Belgium/ULG-11729/2021,B.1.214
Belgium/ULG-11799/2021,B.1.214
Belgium/ULG-11717/2021,B.1.214
England/PORT-2E2512/2021,B.1.214
Belgium/ULG-11626/2021,B.1.214
Belgium/ULG-11629/2021,B.1.214
Belgium/ULG-11260/2021,B.1.214
England/PHEC-2F8AB0/2021,B.1.214
England/PHEC-2F8AA1/2021,B.1.214
England/PHEC-2F8ADE/2021,B.1.214
England/PHEC-2F8A92/2021,B.1.214
France/un-21012200487/2021,B.1.214
France/un-20122280531/2020,B.1.214
England/MILK-EB48D8/2021,B.1.214
England/PHEC-2F8ACF/2021,B.1.214
Belgium/rega-1865/2021,B.1.214
England/PORT-2EFB8C/2021,B.1.214
Switzerland/GE-33028633/2021,B.1.214
France/un-21012230159/2021,B.1.214
Ireland/CW-NVRL-84IRL00453/2021,B.1.214
Switzerland/LU-ETHZ-450115/2021,B.1.214
Switzerland/BL-ETHZ-451076/2021,B.1.214
Ireland/D-NVRL-21IRL20652/2021,B.1.214
Ireland/D-NVRL-21IRL10964/2021,B.1.214
Belgium/rega-1778/2021,B.1.214
England/LOND-12F103A/2020,B.1.214
France/un-21012310104/2021,B.1.214
England/ALDP-F09EA4/2020,B.1.214
England/LOND-12E8634/2020,B.1.214
England/ALDP-CB0759/2020,B.1.214
England/MILK-125F02B/2021,B.1.214
England/MILK-102EDB7/2021,B.1.214
England/MILK-FAA1E8/2021,B.1.214
England/QEUH-D84070/2020,B.1.214
Belgium/rega-2212/2021,B.1.214
Belgium/rega-2213/2021,B.1.214
Belgium/rega-1632/2021,B.1.214
Belgium/rega-1638/2021,B.1.214
Congo/Q001C107AP_2101-TM-r1-021/2020,B.1.214.1
Congo/Q001C113A0_2101-TM-r1-027/2021,B.1.214.1
Congo/Q001C109A7_2101-TM-r1-023/2020,B.1.214.1
Congo/Q001C106AH_2101-TM-r1-020/2020,B.1.214.1
France/un-21012250579/2021,B.1.214.1
Congo/Q001C104A1_2101-TM-r1-018/2020,B.1.214.1
Congo/Q001C093AG_2101-TM-r1-007/2020,B.1.214.1
France/un-21012120165/2021,B.1.214.1
Congo/Q001C114A8_2101-TM-r1-028/2021,B.1.214.1
Congo/Q001C118A6_2101-TM-r1-032/2020,B.1.214.1
Congo/Q001C098AM_2101-TM-r1-012/2020,B.1.214.1
Congo/Q001C088AF_2101-TM-r1-002/2020,B.1.214.1
Congo/Q001C094AO_2101-TM-r1-008/2020,B.1.214.1
Congo/Q001C100A3_2101-TM-r1-014/2020,B.1.214.1
Congo/Q001C102AJ_2101-TM-r1-016/2020,B.1.214.1
Congo/Q001C134AM_2101-TM-r1-048/2020,B.1.214.1
DRC/10399/2020,B.1.214
DRC/D10-0663/2020,B.1.214
Congo/Q001C103AR_2101-TM-r1-017/2020,B.1.214
DRC/4562/2020,B.1.214
DRC/6151/2020,B.1.214
DRC/7042/2020,B.1.214
France/NAQ-SC598/2020,B.1.214
DRC/3070/2020,B.1.214
DRC/10324/2020,B.1.214
DRC/11031/2020,B.1.214
DRC/11572/2020,B.1.214
DRC/11486/2020,B.1.214
DRC/11806/2020,B.1.214
South_Korea/KDCA0186/2020,B.1.214
DRC/11511/2020,B.1.214
DRC/11079/2020,B.1.214
DRC/11022/2020,B.1.214
DRC/10621/2020,B.1.214
Belgium/ITM_C2184_2/2020,B.1.214
DRC/11114/2020,B.1.214
DRC/11145/2020,B.1.214
DRC/11472/2020,B.1.214
DRC/11376/2020,B.1.214
DRC/11369/2020,B.1.214
DRC/6163/2020,B.1.214
DRC/11677/2020,B.1.214
DRC/4222/2020,B.1.214
DRC/10346/2020,B.1.214
DRC/7471/2020,B.1.214
DRC/4075/2020,B.1.214
DRC/D07-1216/2020,B.1.214
DRC/10324/2020,B.1.214
South_Korea/KDCA0186/2020,B.1.214
DRC/4613/2020,B.1.214
DRC/16143/2020,B.1.214
DRC/6853/2020,B.1.214
DRC/7140/2020,B.1.214
DRC/3947/2020,B.1.214
DRC/7864/2020,B.1.214
Uganda/UG088/2020,B.1.214
New_Zealand/20CV0574/2020,B.1.214
Uganda/UG056/2020,B.1.214
Switzerland/GE-33071388/2021,B.1.214
DRC/4084/2020,B.1.214
DRC/7042/2020,B.1.214
France/NAQ-SC598/2020,B.1.214
DRC/4075/2020,B.1.214
DRC/D07-1216/2020,B.1.214
DRC/5735/2020,B.1.214
DRC/6853/2020,B.1.214
DRC/11732/2020,B.1.214
France/un-21012250692/2021,B.1.214
France/un-21012120423/2021,B.1.214
France/un-21012230164/2021,B.1.214
Congo/Q001C117AW_2101-TM-r1-031/2021,B.1.214
Mayotte/IPP00945/2021,B.1.214
Mayotte/IPP01005/2021,B.1.214
Belgium/rega-1784/2021,B.1.214
Belgium/Jessa_55-2106-000474/2021,B.1.214
Belgium/Jessa_55-2105-001032/2021,B.1.214
DRC/11486/2020,B.1.214
DRC/11572/2020,B.1.214
DRC/5815/2020,B.1.214
Denmark/DCGC-39568/2021,B.1.214
Denmark/DCGC-40137/2021,B.1.214
DRC/6163/2020,B.1.214
DRC/11472/2020,B.1.214
DRC/11376/2020,B.1.214
DRC/11369/2020,B.1.214
Belgium/ITM_C2184_2/2020,B.1.214
DRC/11114/2020,B.1.214
New_Zealand/20CV0574/2020,B.1.214
Uganda/UG056/2020,B.1.214
Uganda/UG088/2020,B.1.214
DRC/6151/2020,B.1.214
DRC/11079/2020,B.1.214
DRC/11511/2020,B.1.214
DRC/11022/2020,B.1.214
DRC/7864/2020,B.1.214
DRC/11031/2020,B.1.214
DRC/D10-0663/2020,B.1.214
DRC/7471/2020,B.1.214
DRC/10399/2020,B.1.214
DRC/11677/2020,B.1.214
DRC/4222/2020,B.1.214
DRC/11732/2020,B.1.214
Congo/Q001C100A3_2101-TM-r1-014/2020,B.1.214.1
Congo/Q001C114A8_2101-TM-r1-028/2021,B.1.214.1
Congo/Q001C093AG_2101-TM-r1-007/2020,B.1.214.1
Congo/Q001C104A1_2101-TM-r1-018/2020,B.1.214.1
Congo/Q001C094AO_2101-TM-r1-008/2020,B.1.214.1
Congo/Q001C098AM_2101-TM-r1-012/2020,B.1.214.1
Congo/Q001C117AW_2101-TM-r1-031/2021,B.1.214.1
France/un-21012120165/2021,B.1.214.1
Congo/Q001C106AH_2101-TM-r1-020/2020,B.1.214.1
Congo/Q001C109A7_2101-TM-r1-023/2020,B.1.214.1
France/un-21012250579/2021,B.1.214.1
France/un-21012250692/2021,B.1.214.1
Congo/Q001C107AP_2101-TM-r1-021/2020,B.1.214.1
Congo/Q001C113A0_2101-TM-r1-027/2021,B.1.214.1
France/IDF-IPP03264/2021,B.1.214.1
France/IDF-IPP03254/2021,B.1.214.1
France/IDF-IPP03258/2021,B.1.214.1
Denmark/DCGC-43769/2021,B.1.214.2
Denmark/DCGC-46428/2021,B.1.214.2
Denmark/DCGC-43003/2021,B.1.214.2
Denmark/DCGC-45949/2021,B.1.214.2
Denmark/DCGC-47211/2021,B.1.214.2
Denmark/DCGC-43413/2021,B.1.214.2
Denmark/DCGC-43486/2021,B.1.214.2
Denmark/DCGC-42332/2021,B.1.214.2
Denmark/DCGC-46634/2021,B.1.214.2
Denmark/DCGC-43027/2021,B.1.214.2
Denmark/DCGC-47295/2021,B.1.214.2
Denmark/DCGC-46857/2021,B.1.214.2
Denmark/DCGC-45843/2021,B.1.214.2
Denmark/DCGC-47021/2021,B.1.214.2
Denmark/DCGC-42487/2021,B.1.214.2
Denmark/DCGC-40137/2021,B.1.214.2
Denmark/DCGC-42719/2021,B.1.214.2
Denmark/DCGC-46986/2021,B.1.214.2
Denmark/DCGC-43076/2021,B.1.214.2
Denmark/DCGC-43368/2021,B.1.214.2
Denmark/DCGC-42991/2021,B.1.214.2
Denmark/DCGC-45761/2021,B.1.214.2
Denmark/DCGC-43067/2021,B.1.214.2
Denmark/DCGC-41529/2021,B.1.214.2
Denmark/DCGC-46712/2021,B.1.214.2
Denmark/DCGC-42670/2021,B.1.214.2
Denmark/DCGC-45705/2021,B.1.214.2
Denmark/DCGC-43108/2021,B.1.214.2
Denmark/DCGC-42875/2021,B.1.214.2
Denmark/DCGC-47039/2021,B.1.214.2
Denmark/DCGC-46220/2021,B.1.214.2
Denmark/DCGC-43655/2021,B.1.214.2
Denmark/DCGC-47887/2021,B.1.214.2
Denmark/DCGC-46676/2021,B.1.214.2
Denmark/DCGC-46195/2021,B.1.214.2
Denmark/DCGC-47216/2021,B.1.214.2
Denmark/DCGC-43082/2021,B.1.214.2
Denmark/DCGC-45908/2021,B.1.214.2
Denmark/DCGC-43530/2021,B.1.214.2
Denmark/DCGC-39568/2021,B.1.214.2
Denmark/DCGC-42792/2021,B.1.214.2
Denmark/DCGC-43041/2021,B.1.214.2
Denmark/DCGC-46157/2021,B.1.214.2
Denmark/DCGC-42910/2021,B.1.214.2
Denmark/DCGC-46873/2021,B.1.214.2
Denmark/DCGC-44446/2021,B.1.214.2
Denmark/DCGC-43720/2021,B.1.214.2
Denmark/DCGC-43707/2021,B.1.214.2
Denmark/DCGC-46979/2021,B.1.214.2
Denmark/DCGC-47298/2021,B.1.214.2
Denmark/DCGC-47300/2021,B.1.214.2
Denmark/DCGC-47458/2021,B.1.214.2
Denmark/DCGC-45787/2021,B.1.214.2
Denmark/DCGC-42753/2021,B.1.214.2
Denmark/DCGC-47320/2021,B.1.214.2
Denmark/DCGC-43293/2021,B.1.214.2
Denmark/DCGC-44527/2021,B.1.214.2
Denmark/DCGC-42261/2021,B.1.214.2
Denmark/DCGC-43641/2021,B.1.214.2
Belgium/rega-2008/2021,B.1.214.2
Belgium/rega-2180/2021,B.1.214.2
Belgium/ULG-11631/2021,B.1.214.2
Belgium/ULG-12122/2021,B.1.214.2
Belgium/ULG-12124/2021,B.1.214.2
Belgium/ULG-12123/2021,B.1.214.2
Belgium/ULG-12294/2021,B.1.214.2
France/un-HMN-21022100410/2021,B.1.214.2
France/un-HMN-21022170010/2021,B.1.214.2
France/un-HMN-21022020529/2021,B.1.214.2
Belgium/rega-2154/2021,B.1.214.2
France/un-HMN-21022180510/2021,B.1.214.2
France/un-21012260313/2021,B.1.214.2
Belgium/Jessa_11-2104-005969/2021,B.1.214.2
Belgium/rega-2712/2021,B.1.214.2
Belgium/Jessa_11-2104-005968/2021,B.1.214.2
Belgium/Jessa_55-2106-000474/2021,B.1.214.2
Belgium/Jessa_55-2105-000780/2021,B.1.214.2
Mayotte/IPP01005/2021,B.1.214.2
Mayotte/IPP00850/2021,B.1.214.2
Mayotte/IPP00945/2021,B.1.214.2
Belgium/rega-3020/2021,B.1.214.2
Spain/AS-232185915/2021,B.1.214.2
Switzerland/GE-33171956/2021,B.1.214.2
France/un-HMN-21022180041/2021,B.1.214.2
Belgium/Jessa_55-2107-000602/2021,B.1.214.2
Belgium/ULG-11729/2021,B.1.214.2
Belgium/IPG-19/2021,B.1.214.2
Belgium/ULG-12105/2021,B.1.214.2
Belgium/ULG-11799/2021,B.1.214.2
Belgium/ULG-12428/2021,B.1.214.2
Belgium/ULG-11717/2021,B.1.214.2
Belgium/ULG-11260/2021,B.1.214.2
Belgium/ULG-11626/2021,B.1.214.2
Belgium/ULG-11629/2021,B.1.214.2
Belgium/rega-3208/2021,B.1.214.2
Belgium/rega-3388/2021,B.1.214.2
Belgium/ULG-12395/2021,B.1.214.2
Switzerland/GE-33028633/2021,B.1.214.2
Switzerland/GE-33071388/2021,B.1.214.2
England/PORT-2EFB8C/2021,B.1.214.2
Belgium/rega-1865/2021,B.1.214.2
England/MILK-E6578E/2020,B.1.214.2
England/MILK-EB48D8/2021,B.1.214.2
Belgium/rega-3383/2021,B.1.214.2
France/un-HMN-21022150637/2021,B.1.214.2
Belgium/rega-3379/2021,B.1.214.2
Belgium/rega-3011/2021,B.1.214.2
Belgium/rega-3134/2021,B.1.214.2
Belgium/rega-3518/2021,B.1.214.2
Belgium/rega-3075/2021,B.1.214.2
Belgium/rega-3209/2021,B.1.214.2
Belgium/rega-3023/2021,B.1.214.2
Belgium/ULG-12415/2021,B.1.214.2
Belgium/ULG-12398/2021,B.1.214.2
Belgium/rega-3282/2021,B.1.214.2
Belgium/ULG-12479/2021,B.1.214.2
Belgium/ULG-11941/2021,B.1.214.2
France/un-HMN-21022180359/2021,B.1.214.2
Belgium/rega-1632/2021,B.1.214.2
Belgium/rega-1638/2021,B.1.214.2
France/un-21012230159/2021,B.1.214.2
France/un-HMN-21022170216/2021,B.1.214.2
France/un-HMN-21022160227/2021,B.1.214.2
France/IDF-IPP03920/2021,B.1.214.2
Switzerland/BL-ETHZ-490801/2021,B.1.214.2
Switzerland/GE-33292942/2021,B.1.214.2
Belgium/rega-1778/2021,B.1.214.2
Belgium/rega-1784/2021,B.1.214.2
Ireland/D-NVRL-21IRL10964/2021,B.1.214.2
Ireland/CW-NVRL-84IRL00453/2021,B.1.214.2
Ireland/D-NVRL-21IRL20652/2021,B.1.214.2
Ireland/KE-NVRL-e84IRL44985/2021,B.1.214.2
Ireland/KE-NVRL-e84IRL60186/2021,B.1.214.2
France/un-21012310104/2021,B.1.214.2
Belgium/ULG-12370/2021,B.1.214.2
Belgium/Jessa_55-2108-000042/2021,B.1.214.2
Belgium/ULG-11937/2021,B.1.214.2
Belgium/ULG-12383/2021,B.1.214.2
Belgium/ULG-12381/2021,B.1.214.2
Belgium/rega-3283/2021,B.1.214.2
Belgium/rega-3285/2021,B.1.214.2
Belgium/rega-3179/2021,B.1.214.2
Belgium/rega-3277/2021,B.1.214.2
Belgium/rega-3344/2021,B.1.214.2
Belgium/rega-3342/2021,B.1.214.2
Belgium/rega-3343/2021,B.1.214.2
France/un-HMN-21022220115/2021,B.1.214.2
USA/MD-MDH-0970/2021,B.1.214.2
USA/MD-MDH-1057/2021,B.1.214.2
England/CAMC-1235AF0/2021,B.1.214.2
England/MILK-129BE47/2021,B.1.214.2
England/MILK-102EDB7/2021,B.1.214.2
England/QEUH-E8F108/2021,B.1.214.2
England/QEUH-D84070/2020,B.1.214.2
England/MILK-FAA1E8/2021,B.1.214.2
Switzerland/BS-ETHZ-490849/2021,B.1.214.2
Switzerland/BL-ETHZ-451076/2021,B.1.214.2
Switzerland/LU-ETHZ-450115/2021,B.1.214.2
France/un-HMN-21022180249/2021,B.1.214.2
England/MILK-125F02B/2021,B.1.214.2
England/MILK-1284A6B/2021,B.1.214.2
Belgium/rega-3187/2021,B.1.214.2
Belgium/rega-3315/2021,B.1.214.2
Belgium/rega-2213/2021,B.1.214.2
Belgium/rega-2321/2021,B.1.214.2
Belgium/rega-2320/2021,B.1.214.2
Belgium/rega-3364/2021,B.1.214.2
Belgium/ULG-12215/2021,B.1.214.2
Belgium/ULG-12357/2021,B.1.214.2
Belgium/rega-3054/2021,B.1.214.2
Belgium/rega-3207/2021,B.1.214.2
Belgium/ULG-12158/2021,B.1.214.2
Belgium/ULG-12363/2021,B.1.214.2
Belgium/ULG-12531/2021,B.1.214.2
Belgium/rega-3001/2021,B.1.214.2
Belgium/rega-3003/2021,B.1.214.2
Belgium/rega-3000/2021,B.1.214.2
Belgium/rega-3002/2021,B.1.214.2
England/ALDP-CB0759/2020,B.1.214.2
Belgium/ULG-12224/2021,B.1.214.2
France/un-HMN-21022110141/2021,B.1.214.2
France/un-HMN-21022080622/2021,B.1.214.2
France/un-HMN-21022080646/2021,B.1.214.2
Scotland/EDB3169/2020,B.1.215
Scotland/CVR1959/2020,B.1.215
Scotland/GCVR-173C30/2020,B.1.215
Expand Down

0 comments on commit b97e5da

Please sign in to comment.