adding A.27 and A.28 lineages for issues 11 and 12

lineage_notes.txt

@@ -31,6 +31,8 @@ A.23.1	International lineage with a number of variants of potential biological c
 A.24	South Korean lineage
 A.25	Ugandan lineage
 A.26	UK lineage
+A.27	Mayotte cluster with 18 changes in the long branch leading to this cluster, including 7 NS changes in the spike (L18F, L452R, N501Y, A653V, H655Y, D796Y, G1219V), on a 614D background. pango-designation issue #11.
+A.28	This lineage has 9 changes on its basal branch, including the 69-70del, N501T (not Y) and H655Y. (This variant is picked up by the qPCR S drop). pango-designation issue #12
 B	Base of this lineage also lies in China, with many global exports, two distinct SNPs `8782TC` and `28144CT` define this lineage
 B.1	A large European lineage that corresponds to the Italian outbreak.
 *B.1.1	Reassigned in the current tree. European lineage with 3 clear SNPs `28881GA`,`28882GA`,`28883GC`

lineages.csv

@@ -171417,9 +171417,6 @@ Belgium/ITM_C2183/2020,A
 Nigeria/BO-CV330/2020,A
 Nigeria/BO-CV348/2020,A
 Mali/M002644/2020,A
-Netherlands/ZH-EMC-1312/2020,A
-Switzerland/ZH-UZH-IMV147/2021,A
-Denmark/DCGC-22492/2020,A
 England/PHEC-150B87/2020,A
 England/PHEC-150B96/2020,A
 Ghana/3176_S11/2020,A
@@ -171534,11 +171531,6 @@ Egypt/CUNCI-HGC7I02/2020,A
 Egypt/CCHE57357-A-48/2020,A
 Turkey/HSGM-AD17/2020,A
 France/BFC-IPP00711/2021,A
-USA/NY-Wadsworth-21004943-01/2020,A
-France/OCC-244/2021,A
-United_Arab_Emirates/4315/2020,A
-United_Arab_Emirates/4318/2020,A
-Egypt/CUNCI-HGC9I036/2020,A
 Egypt/CUNCI-HGC6I011/2020,A
 Jordan/IR-ALSR-2578/2020,A
 Burkina_Faso/2-009/2020,A
@@ -175102,3 +175094,76 @@ Singapore/117/2021,B.1.526
 Singapore/116/2021,B.1.526
 Singapore/115/2021,B.1.526
 USA/ME-HETL-J1185/2021,B.1.526
+Mayotte/IPP00638/2021,A.27
+Netherlands/ZH-EMC-1312/2020,A.27
+Netherlands/ZH-EMC-1313/2020,A.27
+Mayotte/IPP00884/2021,A.27
+Mayotte/IPP00931/2021,A.27
+Mayotte/IPP00973/2021,A.27
+Mayotte/IPP00858/2021,A.27
+Mayotte/IPP00885/2021,A.27
+Mayotte/IPP00891/2021,A.27
+Mayotte/IPP00892/2021,A.27
+Mayotte/IPP00936/2021,A.27
+England/205241493/2020,A.27
+England/205241494/2020,A.27
+Denmark/DCGC-22492/2020,A.27
+Denmark/DCGC-22263/2020,A.27
+France/NAQ-0008096/2021,A.27
+Turkey/HSGM-1441/2021,A.27
+Switzerland/ZH-UZH-IMV147/2021,A.27
+Mayotte/IPP01033/2021,A.27
+Belgium/Jessa_55-2102-000125b/2021,A.27
+France/un-21022020122/2021,A.28
+France/un-21022020123/2021,A.28
+France/un-21022020124/2021,A.28
+USA/NY-Wadsworth-21004943-01/2020,A.28
+Oman/89477/2020,A.28
+Jordan/PHBC1/2021,A.28
+Jordan/PHBC4/2021,A.28
+France/OCC-244/2021,A.28
+Switzerland/GE-32961532/2021,A.28
+Switzerland/un-ETHZ-25/2021,A.28
+France/IDF-IPP01088/2021,A.28
+France/IDF-IPP01089/2021,A.28
+France/IDF-IPP01090/2021,A.28
+France/IDF-IPP01084/2021,A.28
+France/IDF-IPP01085/2021,A.28
+France/IDF-IPP01086/2021,A.28
+France/IDF-IPP01087/2021,A.28
+Egypt/CUNCI-HGC9I036/2020,A.28
+United_Arab_Emirates/4315/2020,A.28
+United_Arab_Emirates/4318/2020,A.28
+France/IDF-IPP01091/2021,A.28
+France/IDF-IPP01094/2021,A.28
+France/IDF-IPP01093/2021,A.28
+France/IDF-IPP01095/2021,A.28
+France/IDF-IPP01096/2021,A.28
+France/IDF-IPP01097/2021,A.28
+France/IDF-IPP01098/2021,A.28
+France/IDF-IPP01099/2021,A.28
+France/IDF-IPP01100/2021,A.28
+France/IDF-IPP01102/2021,A.28
+France/IDF-IPP01106/2021,A.28
+France/IDF-IPP01107/2021,A.28
+France/IDF-IPP01108/2021,A.28
+France/IDF-IPP01109/2021,A.28
+France/IDF-IPP01110/2021,A.28
+France/IDF-IPP01111/2021,A.28
+Spain/CN-IBV-97016087/2021,A.28
+Spain/CN-IBV-97016091/2021,A.28
+Spain/CN-IBV-97016094/2021,A.28
+Spain/CN-IBV-97016095/2021,A.28
+Spain/CN-IBV-97016096/2021,A.28
+Spain/CN-IBV-97016107/2021,A.28
+Spain/CN-IBV-97016108/2021,A.28
+Spain/CN-IBV-97016109/2021,A.28
+Spain/CN-IBV-97016124/2021,A.28
+Spain/CN-IBV-97016128/2021,A.28
+Spain/CN-IBV-97016129/2021,A.28
+Spain/CN-IBV-97016131/2021,A.28
+Spain/CN-IBV-97016132/2021,A.28
+Spain/CN-IBV-97016134/2021,A.28
+Spain/CN-IBV-97016147/2021,A.28
+Spain/CN-IBV-97016150/2021,A.28
+Spain/CN-IBV-97016151/2021,A.28