GitHub - comsystan/comsystanj: Complex Systems Analysis for ImageJ

Branches Tags

Name		Name	Last commit message	Last commit date
Latest commit History 502 Commits
csaj-commons		csaj-commons
csaj-plugin1d-cplx-allomscale		csaj-plugin1d-cplx-allomscale
csaj-plugin1d-cplx-dfa		csaj-plugin1d-cplx-dfa
csaj-plugin1d-cplx-dfagen		csaj-plugin1d-cplx-dfagen
csaj-plugin1d-cplx-hrv		csaj-plugin1d-cplx-hrv
csaj-plugin1d-cplx-kc		csaj-plugin1d-cplx-kc
csaj-plugin1d-cplx-lyapunov		csaj-plugin1d-cplx-lyapunov
csaj-plugin1d-cplx-pge		csaj-plugin1d-cplx-pge
csaj-plugin1d-cplx-poincareplot		csaj-plugin1d-cplx-poincareplot
csaj-plugin1d-cplx-rqa		csaj-plugin1d-cplx-rqa
csaj-plugin1d-cplx-symbolicaggregation		csaj-plugin1d-cplx-symbolicaggregation
csaj-plugin1d-detect-events		csaj-plugin1d-detect-events
csaj-plugin1d-detect-qrspeaks		csaj-plugin1d-detect-qrspeaks
csaj-plugin1d-ent-genent		csaj-plugin1d-ent-genent
csaj-plugin1d-ent-perment		csaj-plugin1d-ent-perment
csaj-plugin1d-ent-sampent		csaj-plugin1d-ent-sampent
csaj-plugin1d-eval-autocorr		csaj-plugin1d-eval-autocorr
csaj-plugin1d-eval-fft		csaj-plugin1d-eval-fft
csaj-plugin1d-eval-statistics		csaj-plugin1d-eval-statistics
csaj-plugin1d-frac-dim-frag		csaj-plugin1d-frac-dim-frag
csaj-plugin1d-frac-dim-higuchi1d		csaj-plugin1d-frac-dim-higuchi1d
csaj-plugin1d-frac-dim-katz		csaj-plugin1d-frac-dim-katz
csaj-plugin1d-frac-dim-petrosian		csaj-plugin1d-frac-dim-petrosian
csaj-plugin1d-frac-dim-rse		csaj-plugin1d-frac-dim-rse
csaj-plugin1d-frac-dim-sevcik		csaj-plugin1d-frac-dim-sevcik
csaj-plugin1d-frac-dim-tugofwar		csaj-plugin1d-frac-dim-tugofwar
csaj-plugin1d-frac-hurst-psd		csaj-plugin1d-frac-hurst-psd
csaj-plugin1d-frac-hurst		csaj-plugin1d-frac-hurst
csaj-plugin1d-misc-generator		csaj-plugin1d-misc-generator
csaj-plugin1d-misc-opener		csaj-plugin1d-misc-opener
csaj-plugin1d-preproc-cutout		csaj-plugin1d-preproc-cutout
csaj-plugin1d-preproc-filter		csaj-plugin1d-preproc-filter
csaj-plugin1d-preproc-math		csaj-plugin1d-preproc-math
csaj-plugin1d-preproc-noise		csaj-plugin1d-preproc-noise
csaj-plugin1d-preproc-resampling		csaj-plugin1d-preproc-resampling
csaj-plugin1d-preproc-surrogate		csaj-plugin1d-preproc-surrogate
csaj-plugin2d-cplx-kc		csaj-plugin2d-cplx-kc
csaj-plugin2d-ent-genent		csaj-plugin2d-ent-genent
csaj-plugin2d-frac-dim-boxcounting		csaj-plugin2d-frac-dim-boxcounting
csaj-plugin2d-frac-dim-correlation-directional		csaj-plugin2d-frac-dim-correlation-directional
csaj-plugin2d-frac-dim-correlation		csaj-plugin2d-frac-dim-correlation
csaj-plugin2d-frac-dim-ff		csaj-plugin2d-frac-dim-ff
csaj-plugin2d-frac-dim-fft		csaj-plugin2d-frac-dim-fft
csaj-plugin2d-frac-dim-generalized		csaj-plugin2d-frac-dim-generalized
csaj-plugin2d-frac-dim-higuchi1d		csaj-plugin2d-frac-dim-higuchi1d
csaj-plugin2d-frac-dim-higuchi2d		csaj-plugin2d-frac-dim-higuchi2d
csaj-plugin2d-frac-dim-minkowski		csaj-plugin2d-frac-dim-minkowski
csaj-plugin2d-frac-dim-pyramid		csaj-plugin2d-frac-dim-pyramid
csaj-plugin2d-frac-dim-tugofwar		csaj-plugin2d-frac-dim-tugofwar
csaj-plugin2d-frac-lacunarity		csaj-plugin2d-frac-lacunarity
csaj-plugin2d-frac-succolarity		csaj-plugin2d-frac-succolarity
csaj-plugin2d-misc-generator		csaj-plugin2d-misc-generator
csaj-plugin2d-misc-opener		csaj-plugin2d-misc-opener
csaj-plugin2d-preproc-filter		csaj-plugin2d-preproc-filter
csaj-plugin2d-preproc-noise		csaj-plugin2d-preproc-noise
csaj-plugin2d-preproc-preprocess		csaj-plugin2d-preproc-preprocess
csaj-plugin2d-preproc-surrogate		csaj-plugin2d-preproc-surrogate
csaj-plugin3d-cplx-kc		csaj-plugin3d-cplx-kc
csaj-plugin3d-ent-genent		csaj-plugin3d-ent-genent
csaj-plugin3d-frac-dim-boxcounting		csaj-plugin3d-frac-dim-boxcounting
csaj-plugin3d-frac-dim-correlation		csaj-plugin3d-frac-dim-correlation
csaj-plugin3d-frac-dim-ff		csaj-plugin3d-frac-dim-ff
csaj-plugin3d-frac-dim-fft		csaj-plugin3d-frac-dim-fft
csaj-plugin3d-frac-dim-generalized		csaj-plugin3d-frac-dim-generalized
csaj-plugin3d-frac-dim-higuchi3d		csaj-plugin3d-frac-dim-higuchi3d
csaj-plugin3d-frac-dim-minkowski		csaj-plugin3d-frac-dim-minkowski
csaj-plugin3d-frac-dim-tugofwar		csaj-plugin3d-frac-dim-tugofwar
csaj-plugin3d-frac-lacunarity		csaj-plugin3d-frac-lacunarity
csaj-plugin3d-misc-generator		csaj-plugin3d-misc-generator
csaj-plugin3d-misc-opener		csaj-plugin3d-misc-opener
csaj-plugin3d-preproc-filter		csaj-plugin3d-preproc-filter
csaj-plugin3d-preproc-noise		csaj-plugin3d-preproc-noise
csaj-plugin3d-preproc-surrogate		csaj-plugin3d-preproc-surrogate
.gitignore		.gitignore
ChangeLog.txt		ChangeLog.txt
LICENSE.txt		LICENSE.txt
README.md		README.md
maven-build-aggregated-projects.bat		maven-build-aggregated-projects.bat
pom.xml		pom.xml

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ComsystanJ (Complex Systems Analysis for ImageJ) is a collection of Fiji/ImageJ2 plugins to compute the complexity, entropy, fractal dimension and other nonlinear measures of 1D signals, 2D images and 3D image volumes.

Installation

Download a ComsystanJ release from https://github.com/comsystan/comsystanj/releases. Unpack the *.zip file and copy the whole folder to the plugins folder of Fiji. Alternatively, the ComsystanJ *.jar files can be imported using the Fiji command Plugins/Install. Starting Fiji, the ComsystanJ plugins appear under Plugins/ComsystanJ.

To update ComsystanJ, the old ComsystanJ folder must be replaced with a new folder.

Fiji should be up to date, and the SCIFIO option (Edit/Options/ImageJ2) must be enabled.

It is recommended to download a clean copy of the latest Fiji version from the Fiji archive https://downloads.imagej.net/fiji/archive.

License

comsystan/comsystanj

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