v1.0.1

Fix

• fix logging (e8cad2d)
• fix logs in refchef cook (66d1aaf)
• fix species column in refchef-serve flask app (9b32cc5)

Documentation

• cleaning up the documentation (dd0b1be)
• separated the docs into distinct pages, added some use case figures (which need to be fixed still) (2939e30)
• added some more details to installation.md, added some figures to index.md, changed specs.md to be more about all file specs and added links betw usage and specs files (84ba247)
• adding some more details on installation, updated quickstart.md and index.md to (fb7cf06)