Skip to content

Issues: compbiocore/bioflows

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

34 Open 14 Closed
34 Open 14 Closed
Author
Filter by author
Label
Filter by label
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Milestones
Filter by milestone
Assignee
Filter by who’s assigned
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Issues list

Bioflows fails to run on large SRR files bug
#73 opened Jan 23, 2021 by Nando1014
slurm 20 updates bug
#71 opened Jan 16, 2021 by JRWallace
generic run commands?
#69 opened Jan 14, 2021 by JRWallace
data layout from SRA is not reliable
#66 opened May 13, 2020 by aguang
Provide a few examples of how the suffix option works (see comment) documentation
#65 opened May 11, 2020 by JRWallace
Document all potential fields for run_parms documentation
#64 opened May 11, 2020 by JRWallace
There are essentially two tables of contents.. see comment documentation
#62 opened May 11, 2020 by JRWallace
Give a more descriptive error message for the 'bootstrap' error where a job ID isn't assigned
#61 opened May 11, 2020 by JRWallace
Are there any changes to the default arguments for any of the programs run in bioflows? documentation
#60 opened May 11, 2020 by JRWallace
Which programs are currently supported via bioflows? documentation
#59 opened May 11, 2020 by JRWallace
Add information about how to re-run analyses (e.g., do checkpoint files need to be deleted?) documentation
#58 opened Mar 18, 2020 by JRWallace
setup environment for bioflows docs is out of date
#57 opened Mar 18, 2020 by aguang
a lot of links don't work
#56 opened Mar 18, 2020 by aguang
remove ordered dict constraint
#55 opened Mar 18, 2020 by aguang
Some docs on yaml spec page are out of date documentation
#54 opened Mar 17, 2020 by JRWallace
1
Testing Clickup
#53 opened Jan 16, 2020 by ashokrags
add bowtie2 wrapper
#49 opened Sep 23, 2019 by JRWallace
clarify how changing input and output settings work when the default flag is set
#48 opened Sep 16, 2019 by JRWallace
documentation on how to contribute
#47 opened Aug 14, 2019 by aguang
humann2 wrappers FEATURE This request is not critical. Could be addressed in the next release
#44 opened Aug 13, 2019 by aguang
@aguang
Fix and standardize for all wrappers update input/output function for wrappers
#40 opened Apr 23, 2019 by ashokrags
refactor wrappers_samtools to update default args
#37 opened Apr 18, 2019 by ashokrags
refactor wrappers.py to update default args
#36 opened Apr 18, 2019 by ashokrags
refactor wrappers_picard to update default args
#35 opened Apr 18, 2019 by ashokrags
refactor wrappers_gatk to update default args
#34 opened Apr 18, 2019 by ashokrags
ProTip! Follow long discussions with comments:>50.