loadContents testing.

v1.0/conformance_test_v1.0.yaml

@@ -2590,3 +2590,76 @@
   doc: Test an anonymous enum inside an array inside a record, SchemaDefRequirement
   tags: [command_line_tool, schema_def]
 
+- tool: v1.0/loadContents-output-contains-b.cwl
+  job: v1.0/64kbplus1-job.json
+  should_fail: true
+  id: 198
+  label: ouptut_loadContents_fails_over_64kb
+  doc: Test loadContents on output binding fails over 64kb.
+  tags: [command_line_tool, inline_javascript]
+
+- tool: v1.0/loadContents-output-contains-b.cwl
+  job: v1.0/64kbminus1-job.json
+  output:
+    contains_b: true
+  id: 199
+  label: ouptut_loadContents_fails_over_64kb_control
+  doc: Test loadContents on output binding fails over 64kb (control for previous test)
+  tags: [command_line_tool, inline_javascript]
+
+- tool: v1.0/loadContents-input-contains-b-wf.cwl
+  job: v1.0/64kbplus1-job.json
+  should_fail: true
+  id: 200
+  label: step_input_loadContents_fails_over_64kb
+  doc: Test loadContents on step input fails over 64kb.
+  tags: [workflow, inline_javascript]
+
+- tool: v1.0/loadContents-input-contains-b-wf.cwl
+  job: v1.0/64kbminus1-job.json
+  output:
+    contains_b: true
+  id: 201
+  label: step_input_loadContents_fails_over_64kb_control
+  doc: Test loadContents on step input fails over 64kb (control for previous test)
+  tags: [workflow, inline_javascript]
+
+- tool: v1.0/file-literal-output-size.cwl
+  job: v1.0/size_64kb_plus_1.json
+  should_fail: true
+  id: 202
+  label: file_literal_size_fails_over_64kb
+  doc: Test file literals of size over 64kb fail.
+  tags: [ expression_tool ]
+
+- tool: v1.0/file-literal-output-size.cwl
+  job: v1.0/size_64kb.json
+  output:
+    lit:
+      class: File
+      checksum: "sha1$79db5888b5d38e10afbdbd14a19cd1caa9044c65"
+      size: 65536
+  id: 203
+  label: file_literal_size_fails_over_64kb_control
+  doc: Test file literals of size over 64kb fail (control for previous test)
+  tags: [ expression_tool ]
+
+- tool: v1.0/cat-default-file-literal-64kb-plus-1.cwl
+  job: v1.0/empty.json
+  should_fail: true
+  id: 204
+  label: file_literal_as_default_size_fails_over_64kb
+  doc: Test file literals as tool defaults of size over 64kb fail (control for previous test)
+  tags: [ command_line_tool ]
+
+- tool: v1.0/cat-default-file-literal-64kb.cwl
+  job: v1.0/empty.json
+  output:
+    output:
+      class: File
+      checksum: "sha1$79db5888b5d38e10afbdbd14a19cd1caa9044c65"
+      size: 65536
+  id: 205
+  label: file_literal_as_default_size_fails_over_64kb_control
+  doc: Test file literals as tool defaults of size over 64kb fail (control for previous test)
+  tags: [ command_line_tool ]

v1.0/v1.0/64kbminus1-job.json

@@ -0,0 +1 @@
+{"in": {"class": "File", "location": "64kbminus1"}}

v1.0/v1.0/64kbplus1-job.json

@@ -0,0 +1 @@
+{"in": {"class": "File", "location": "64kbplus1"}}

v1.0/v1.0/file-literal-output-size.cwl

@@ -0,0 +1,15 @@
+#!/usr/bin/env cwl-runner
+
+class: ExpressionTool
+cwlVersion: v1.0
+requirements:
+  - class: InlineJavascriptRequirement
+
+inputs:
+  size: int
+outputs: { lit: File }
+expression: |
+  ${
+     var contents = "a".repeat(inputs.size);
+     return { "lit": { "class": "File", "basename": "lit", "contents": contents } };
+  }

v1.0/v1.0/loadContents-input-contains-b-wf.cwl

@@ -0,0 +1,52 @@
+cwlVersion: v1.0
+class: Workflow
+
+requirements:
+  StepInputExpressionRequirement: {}
+  InlineJavascriptRequirement: {}
+
+inputs:
+  in:
+    type: File
+
+outputs:
+  contains_b:
+    type: boolean
+    outputSource: check_file/contains_b
+
+steps:
+
+  create_file:
+    run:
+      class: CommandLineTool
+      inputs:
+        file1:
+          type: File
+          inputBinding: {position: 1}
+      outputs:
+        output:
+          type: File
+          outputBinding: {glob: out.txt}
+
+      baseCommand: cat
+      stdout: out.txt
+
+    in: {file1: in}
+    out: [ output ]
+
+  check_file:
+    run:
+      class: ExpressionTool
+      requirements: { InlineJavascriptRequirement: {} }
+      inputs:
+      - { id: bytes, type: File, inputBinding: { loadContents: true } }
+      outputs: { contains_b: boolean }
+      expression: |
+        ${
+           return {"contains_b": inputs.bytes.contents.indexOf("b") >= 0};
+        }
+    in:
+      bytes:
+        source: create_file/output
+
+    out: [ contains_b ]

v1.0/v1.0/loadContents-output-contains-b.cwl

@@ -0,0 +1,21 @@
+#!/usr/bin/env cwl-runner
+
+class: CommandLineTool
+cwlVersion: v1.0
+
+requirements:
+  - class: InlineJavascriptRequirement
+
+inputs:
+  in:
+    type: File
+    inputBinding: {position: 1}
+outputs:
+  contains_b:
+    type: boolean
+    outputBinding:
+      glob: out.txt
+      loadContents: true
+      outputEval: $(self[0].contents.indexOf("b") >= 0)
+baseCommand: cat
+stdout: out.txt

v1.0/v1.0/size_64kb.json

@@ -0,0 +1 @@
+{"size": 65536}

v1.0/v1.0/size_64kb_plus_1.json

@@ -0,0 +1 @@
+{"size": 65537}