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Issues list

preprocess_cds running for hours
#717 opened Apr 30, 2024 by alicerlam
how to read graph_test output of monocle 3
#716 opened Apr 25, 2024 by synatkeamsk
Driven by confounders?
#714 opened Apr 18, 2024 by kylagelev
question about "plot_genes_in_pseudotime"
#713 opened Apr 16, 2024 by vgettaa
Multiple non-continuous batches with align_cds?
#712 opened Apr 12, 2024 by fauxrest
Trajectory Analysis
#710 opened Apr 9, 2024 by isaiao01
Website docs table of contents clipping on mobile browsers bug Something isn't working
#709 opened Mar 24, 2024 by ctrapnell
1
Why the psudotime of my root cell is not zero? bug Something isn't working
#708 opened Mar 18, 2024 by wanglu2014
Upregulated and donwregulated genes in gene module
#706 opened Mar 13, 2024 by rowoc
choose_cells/ERROR: calculateLW: the reduced dims matrix has too few rows/No principal graph for UMAP calculated. bug Something isn't working
#705 opened Mar 8, 2024 by HaixJiang
Error while running learn_graph(cds, use_partition = FALSE) bug Something isn't working
#704 opened Mar 1, 2024 by Fatemeh99m
Installation Failure of monocle3 on Windows bug Something isn't working
#703 opened Feb 29, 2024 by Cloudien
UMAP fails with later version of irlba package bug Something isn't working
#701 opened Feb 9, 2024 by rfriedman22
1
tmp_dir not deleting after R session ends bug Something isn't working
#698 opened Feb 6, 2024 by eliza-barkan
plot_cells_3d() display colData values when hovering over cells
#697 opened Feb 2, 2024 by Sgonzal97
openssl issue with Rstudio when installing monocle3 through bioconda bug Something isn't working
#695 opened Jan 18, 2024 by iaradsouza1
configure: error: libproj or sqlite3 not found in standard or given locations. bug Something isn't working
#694 opened Dec 24, 2023 by asmlgkj
Error in learn_graph: unused argument (rann.k = rann.k) bug Something isn't working
#693 opened Dec 7, 2023 by Fanny-bio
preprocess_cds Error in function 'as_cholmod_sparse' not provided by package 'Matrix' bug Something isn't working
#690 opened Nov 12, 2023 by weiyouzi321
25
Error in plot_genes_in_pseudotime bug Something isn't working
#689 opened Nov 3, 2023 by sunxw123
1
How to choose starting point in seurat cluster to build trajectory analysis
#687 opened Oct 25, 2023 by synatkeamsk
aggregate_gene_expression() add norm_method = "none"
#686 opened Oct 25, 2023 by Erlmeierlu
Error in t(rj) : invalid 'lazy' to R_sparse_transpose() when learn_graph bug Something isn't working
#684 opened Oct 3, 2023 by bdiluccia
1
differential analysis between conditions
#683 opened Sep 29, 2023 by yamihn
Find differentially expressed genes at branchpoints which decide cell fates
#680 opened Sep 13, 2023 by gilstel
ProTip! Exclude everything labeled bug with -label:bug.