Sample Workflow

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Colby Ford edited this page Oct 25, 2018 · 1 revision

Load in your libraries

library(msgen)
library(AzureSMR)

Read in your FASTA/BAM files from your local machine

Get connected to your Azure subscription

sc <- createAzureContext(tenantID = "{TID}", clientID = "{CID}", authKey= "{KEY}")

Write your files to blob storage

azurePutBlob(sc, storageAccount = "mygenomicsstorage", container = "fastafiles", 
             contents = fastafile1,
             blob = fastafile1)

msgen | Created by Colby T. Ford, Ph.D. - The University of North Carolina at Charlotte, Dept. of Bioinformatics and Genomics