-
Notifications
You must be signed in to change notification settings - Fork 0
/
pyproject.toml
49 lines (44 loc) · 1.11 KB
/
pyproject.toml
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
[project]
name = "clinvar_ingest"
authors = [
{name = "Kyle Ferriter", email = "kferrite@broadinstitute.org"},
]
description = "Parsing and working with ClinVar Variation XML in relational form"
readme = "README.md"
requires-python = ">=3.11"
keywords = ["bioinformatics", "clinvar"]
license = {text = "Apache-2.0"}
classifiers = [
"Programming Language :: Python :: 3",
]
dependencies = [
"python-dotenv~=1.0.0",
"xmltodict==0.13.0",
"coloredlogs",
"click~=8.1.7",
"google-cloud-bigquery~=3.20.1",
"google-cloud-storage~=2.13.0",
"fastapi~=0.104.1",
"uvicorn~=0.24.0",
"requests~=2.31.0",
]
dynamic = ["version"]
[project.optional-dependencies]
dev = [
"ipykernel",
"black~=23.9.1",
"isort~=5.12.0",
"ruff~=0.1.5",
"pytest~=7.4.3",
"pylint~=3.0.2",
"httpx~=0.25.2",
]
[project.scripts]
clinvar-ingest = "clinvar_ingest.main:main"
[tool.setuptools.packages.find]
include = ["clinvar_ingest*"]
[tool.setuptools.package-data]
"clinvar_ingest" = ["*.json", ".*.env"]
"clinvar_ingest.cloud.bigquery.bq_json_schemas" = ["*.json"]
[tool.isort]
profile = "black"