Vessel wall segmentation labels from the OAI dataset for training FRAPPE.
To use the labels, please kindly cite our paper Chen L, Canton G, Liu W, et al. Fully automated and robust analysis technique for popliteal artery vessel wall evaluation (FRAPPE) using neural network models from standardized knee MRI. Magn Reson Med. 2020;84:2147–2160. https://doi.org/10.1002/mrm.28237
Due to the data sharing policy, we cannot post original images here. Please acquire the images from https://nda.nih.gov/oai/
There are four datasets posted here. Train and validation sets are used for developing FRAPPE from the baseline scans in the OAI dataset. After development, Rep set is used to evaluate the reproducibility between FRAPPE vs human reviewer 1, FRAPPE vs human reviewer 2, and human reviewer 1 vs human reviewer 2. Finally, the test set (half labeled by human reviewer 1 and half by human reivewer 2) is used to report segmentation accuracy. 23 cases for training, 2 for validation, 10 for reproducibility, 25 for testing.
Pid and Eid and subject and scan id from the OAI dataset VTSPID and VTSEID are the remaned id in our system
| Timepoint(s) | Pid | Eid | VTSPID | VTSEID | Side | Reviewer | Dataset |
|---|---|---|---|---|---|---|---|
| V00/BL | 9118689 | 10195407 | OAI-665 | 7993 | L | G | Train |
| V00/BL | 9126497 | 10716807 | OAI-625 | 92924 | L | G | Train |
| V00/BL | 9127864 | 10583105 | OAI-262 | 14657 | L | G | Train |
| V00/BL | 9145541 | 10180107 | OAI-685 | 10395 | L | G | Train |
| V00/BL | 9154516 | 10728007 | OAI-747 | 65082 | L | G | Train |
| V00/BL | 9159961 | 10127307 | OAI-14 | 42953 | L | G | Train |
| V00/BL | 9160801 | 10519109 | OAI-478 | 29902 | L | G | Train |
| V00/BL | 9191054 | 10729308 | OAI-768 | 81844 | L | G | Train |
| V00/BL | 9242956 | 10503008 | OAI-835 | 84986 | L | G | Train |
| V00/BL | 9379540 | 10836207 | OAI-333 | 77561 | L | G | Train |
| V00/BL | 9422008 | 10339808 | OAI-235 | 7766 | L | G | Train |
| V00/BL | 9564520 | 10423309 | OAI-135 | 49324 | L | G | Train |
| V00/BL | 9618705 | 10210907 | OAI-675 | 30925 | L | G | Train |
| V00/BL | 9620472 | 10691417 | OAI-984 | 79874 | L | G | Train |
| V00/BL | 9621886 | 10481307 | OAI-887 | 39592 | L | G | Train |
| V00/BL | 9676775 | 10675407 | OAI-933 | 31850 | L | G | Train |
| V00/BL | 9684366 | 10034105 | OAI-750 | 47849 | L | G | Train |
| V00/BL | 9698638 | 10493907 | OAI-886 | 22631 | L | G | Train |
| V00/BL | 9809469 | 10085707 | OAI-924 | 77140 | L | G | Train |
| V00/BL | 9833361 | 10270305 | OAI-536 | 27323 | L | G | Train |
| V00/BL | 9861824 | 10551008 | OAI-92 | 34548 | L | G | Train |
| V00/BL | 9886746 | 10881704 | OAI-413 | 27827 | L | G | Train |
| V00/BL | 9932333 | 10301007 | OAI-550 | 66158 | L | G | Train |
| V00/BL | 9714513 | 10068707 | OAI-147 | 27172 | L | G | Validation |
| V00/BL | 9848855 | 10075707 | OAI-472 | 25300 | L | G | Validation |
| V03/24M | 9073948 | 20071017L | OAI-277 | 92387 | L | B | Rep |
| V06/48M | 9494408 | 20080722L | OAI-280 | 96481 | L | B | Rep |
| V00/BL | 9577425 | 10459613R | OAI-426 | 66137 | R | B | Rep |
| V00/BL | 9590486 | 10434007L | OAI-266 | 11988 | L | B | Rep |
| V05/36M | 9708289 | 20071126R | OAI-215 | 91079 | R | B | Rep |
| V00/BL | 9709257 | 10693307L | OAI-284 | 96331 | L | B | Rep |
| V00/BL | 9757487 | 10213608L | OAI-344 | 45138 | L | B | Rep |
| V00/BL | 9788979 | 10787708L | OAI-447 | 48598 | L | B | Rep |
| V06/48M | 9813780 | 20081204R | OAI-466 | 85410 | R | B | Rep |
| V00/BL | 9918649 | 11096808L | OAI-479 | 16649 | L | B | Rep |
| V00/BL | 9126648 | 11164007L | OAI-409 | 34637 | L | W | Test |
| V10/96M | 9184556 | 20130909L | OAI-465 | 4010 | L | W | Test |
| V00/BL | 9210045 | 10735313R | OAI-244 | 80374 | R | G | Test |
| V06/48M | 9363262 | 20090727L | OAI-806 | 99375 | L | G | Test |
| V10/96M | 9415301 | 20130822L | OAI-524 | 58681 | L | W | Test |
| V10/96M | 9475264 | 20120716R | OAI-613 | 45262 | R | G | Test |
| V00/BL | 9534036 | 10895310R | OAI-406 | 69091 | R | W | Test |
| V05/36M | 9546108 | 20081119R | OAI-811 | 74797 | R | W | Test |
| V10/96M | 9558136 | 20130925L | OAI-116 | 25863 | L | G | Test |
| V03/24M | 9563176 | 20060321L | OAI-68 | 89629 | L | G | Test |
| V03/24M | 9564729 | 20071030R | OAI-448 | 43032 | R | W | Test |
| V00/BL | 9629890 | 10482907L | OAI-23 | 88935 | L | W | Test |
| V03/24M | 9693599 | 20071113R | OAI-325 | 17797 | R | G | Test |
| V00/BL | 9746220 | 10168913R | OAI-764 | 69703 | R | G | Test |
| V00/BL | 9783798 | 10081107L | OAI-900 | 38192 | L | W | Test |
| V01/12M | 9821872 | 20051222R | OAI-968 | 98683 | R | G | Test |
| V05/36M | 9876792 | 20080513L | OAI-581 | 49710 | L | W | Test |
| V03/24M | 9902757 | 20061221L | OAI-307 | 25869 | L | G | Test |
| V10/96M | 9911265 | 20130408L | OAI-635 | 14448 | L | W | Test |
| V05/36M | 9916542 | 20080902R | OAI-703 | 98030 | R | W | Test |
| V00/BL | 9919023 | 10771115R | OAI-938 | 33274 | R | G | Test |
| V03/24M | 9926617 | 20070515L | OAI-418 | 99467 | L | G | Test |
| V03/24M | 9968721 | 20070725L | OAI-518 | 95004 | L | W | Test |
| V08/72M | 9981798 | 20101229R | OAI-362 | 48627 | R | G | Test |
| V00/BL | 9858512 | 10476330R | OAI-433 | 80459 | R | W | Test |
Human labeled contours using an inhouse annotation tool (CASCADE, doi: 10.1097/rmr.0b013e3181598d9d). Results are saved in the XML format. Please see the Contour_Point node for contour coordinates. Please note that all images were resized to 512*512 before labeling in CASCADE.