A software package for analyzing live cell super resolution microscopy data.
Installation
For users with git installed:
The following command will give the user a clone of the repository: $ git clone https://github.com/cisselab/LiveSRM.git
The user should then add LiveSRM to the MATLAB search path
For other users:
The software can also be obtained by downloading the zip from https://github.com/cisselab/LiveSRM/archive/master.zip
The software should be unzipped, and added to the MATLAB search path.
Pair Correlation Analysis
For the pair correlation analysis, our software makes use of code developed by another group. The function get_autocorr is made available in the publication cited below. The code should be downloaded, renamed as get_autocorr.m and added to the MATLAB search path.
Sarah L. Veatch et al. Correlation Functions Quantify Super-Resolution Images and Estimate Apparent Clustering Due to Over-Counting. PLOS ONE. 27 Feb 2012 DOI: 10.1371/journal.pone.0031457