ENIGMA_subamyg

September 9th 2021 | C. Vriend - Updated version of the container with the newly released FreeSurfer7, FSL 5.0.10 and python to run custom scripts to plot volumes. based on ENIGMA sub thal container

Name		Name	Last commit message	Last commit date
Latest commit History 14 Commits
.gitattributes		.gitattributes
LICENSE		LICENSE
QA_amygseg.sh		QA_amygseg.sh
QA_hippseg.sh		QA_hippseg.sh
README.md		README.md
REFERENCE_1subj_thalQC.html		REFERENCE_1subj_thalQC.html
REFERENCE_avg_thalQC.html		REFERENCE_avg_thalQC.html
combine_subnuclei_v3.sh		combine_subnuclei_v3.sh
create_webpages.sh		create_webpages.sh
dockerfile		dockerfile
extract_vols_plot_amygdala.py		extract_vols_plot_amygdala.py
extract_vols_plot_hippocampus.py		extract_vols_plot_hippocampus.py
license.txt		license.txt
mainscript.sh		mainscript.sh
makeBIDS.sh		makeBIDS.sh
quantifyThalamicNuclei.sh		quantifyThalamicNuclei.sh
runcmd.docker		runcmd.docker
segmentQA2html.py		segmentQA2html.py

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