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Issues list

Calculate Free binding energy without schrodingers suite
#1311 opened Feb 28, 2024 by FlorianSchustek3T
Clarification on why vacuum simulation needed for hydration free energy
#1310 opened Dec 12, 2023 by zanebeckwith
2
leap returned non-zero exit status 31
#1309 opened Dec 11, 2023 by sobertie
Varying free energy estimates depending on sampler used
#1307 opened Dec 11, 2023 by thomas-elix
support Membrane Protein Systems ?
#1306 opened Nov 29, 2023 by ErikZhang-9762
Silent GAFF2 failures can happen easily
#1304 opened Jul 10, 2023 by simonaxelrod
Question: How to measure simulation time and how much is necessary?
#1303 opened May 18, 2023 by sammun-insitro
Issue in Yank's calls to OpenMMTools MultiStateReporter
#1302 opened Apr 26, 2023 by sukritsingh
1
support for python 3.10?
#1301 opened Apr 19, 2023 by zhang-ivy
1
2
problem during absolute binding energy calculation
#1300 opened Apr 14, 2023 by mayank-kohli
3
NetCDF upstream changes breaking Yank (and can't update OpenMMtools)
#1298 opened Apr 12, 2023 by sukritsingh
I got the following error.
#1295 opened Mar 17, 2023 by VirtualChemist
6
pymbar 4 compatibility
#1294 opened Dec 8, 2022 by j-wags
1
Load() missing one argument
#1293 opened Nov 3, 2022 by RishalAggarwal
Free energy of solvation for charged ligand
#1292 opened Oct 31, 2022 by moradza
The periodic box size has decreased to less than twice the nonbonded cutoff
#1291 opened Sep 26, 2022 by vemaparna
a error about antecamber
#1289 opened Sep 8, 2022 by kingljy0818
5
Yank installation Python3.10 import error
#1288 opened Sep 3, 2022 by JonaTheHutt
1
Migrate thermodynamic trailblazing to openmmtools refactoring Slated for refactoring
#1287 opened Jul 21, 2022 by jchodera
generate_free_energy() fails because standard state correction is missing from the reporter bug Priority high
#1282 opened Jul 15, 2022 by zhang-ivy 0.25.3
1
Cannot apply the restraint. No receptor-ligand complex could be found.
#1281 opened Jul 5, 2022 by JacekKedzierski
1
Issues about the calculation of solvation free energy in organic solvent
#1280 opened Jul 5, 2022 by Dropletsimuli
difference in experimental and calculated binding free energy for p-xylene -T4Lysozyme example
#1278 opened Jun 21, 2022 by vemaparna
6
Is it possible to use enhanced sampling algorithms such as REST/REST2?
#1277 opened Jun 14, 2022 by jackzzs
1
T4 lysozyme example with implicit solvent runs out of memory when lots of memory appears to be available
#1276 opened May 20, 2022 by therealchrisneale
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