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32 Open 239 Closed
32 Open 239 Closed
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Issues list

Exception in thread "main" java.lang.NullPointerException bug
#567 opened Sep 19, 2023 by leemdi
1
Update ini4j dependency to at least 0.5.4 due to CVE-2022-41404 bug
#566 opened Apr 14, 2023 by thomasredlin
UTF-8 output for synonymous mutations in VCF file bug
#560 opened Oct 20, 2022 by skurscheid
1
Jannovar does not annotate deletions for stop_gained (only frameshift) bug
#557 opened Aug 31, 2022 by janeliutw
2
3' Shifting
#551 opened Jun 28, 2022 by lshimp
11
Command download broken bug
#550 opened Jun 28, 2022 by holtgrewe
1
Enhancements to hgvs to vcf conversion resiliency enhancement
#549 opened Jun 17, 2022 by h-joshi
Code optimization suggestions enhancement
#548 opened Jun 8, 2022 by noobyu6
Support MANE transcripts enhancement
#546 opened Apr 28, 2022 by holtgrewe
Invalid aminoacid change detected due to GTF file phase ignored bug
#541 opened Mar 15, 2022 by znikasz v0.39
2
Report the effect for every genes enhancement
#530 opened Jun 27, 2021 by smw1414
1
Remove support for UCSC transcripts enhancement
#523 opened Jun 9, 2021 by holtgrewe
5
Use single branch instead of develop/master split. enhancement
#521 opened Jun 8, 2021 by holtgrewe
2
Complete support for parsing HGVS nucleotide expressions. enhancement help wanted Help is welcome for this.
#519 opened Jun 8, 2021 by holtgrewe
5
Implement HGVS parsing for protein sequences enhancement help wanted Help is welcome for this.
#516 opened Jun 8, 2021 by holtgrewe
Cannot parse HGVS repeats enhancement help wanted Help is welcome for this.
#490 opened May 16, 2020 by markwoon
1
Getting java.lang.InternalError while annotation with 1000 Genome Db
#480 opened Nov 26, 2019 by Habush
Java version check
#468 opened Sep 5, 2019 by daynefiler
4
Make compatible with more recent versions of dbSNP
#437 opened Feb 28, 2019 by holtgrewe Backlog
1
Can't annotate CADD scores from dbNSFP task
#409 opened Apr 27, 2018 by la60312 Backlog
1
FORMAT/PR flag not set for child task
#398 opened Mar 5, 2018 by holtgrewe Backlog
New Feature: simplify curation of annotation transcripts discussion
#374 opened Nov 29, 2017 by roland-ewald Backlog
15
Interfaces for core classes enhancement
#352 opened Jun 27, 2017 by roland-ewald Backlog
2
Calculate position to exon/intron boundary enhancement
#307 opened Jan 21, 2017 by pnrobinson Backlog
5
More tests for CLIs enhancement
#294 opened Dec 16, 2016 by visze 1.0.0
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