HPC Episode

[multimeric]

• Added an optional HPC episode, which uses Slurm as an example
• This has been written using the current plan writing system. Once/if Code Re-Use #19 is merged, some of this will need re-writing to remove redundancy

[github-actions]

Thank you!

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🤖 This automated message can help you check the rendered files in your submission for clarity. If you have any questions, please feel free to open an issue in {sandpaper}.

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Rendered Changes

🔍 Inspect the changes: https://github.com/carpentries-incubator/targets-workshop/compare/md-outputs..md-outputs-PR-18

The following changes were observed in the rendered markdown documents:

 basic-targets.md   |    8 +-
 branch.md          |   32 +-
 config.yaml (gone) |   87 ---
 files.md           |   22 +-
 files/functions.R  |  109 +++-
 hpc.md (new)       |   41 ++
 lifecycle.md       |   12 +-
 md5sum.txt         |   41 +-
 packages.md        |   12 +-
 renv.lock (gone)   | 1793 ----------------------------------------------------
 setup.md           |    2 +-
 11 files changed, 214 insertions(+), 1945 deletions(-)

What does this mean?

If you have source files that require output and figures to be generated (e.g. R Markdown), then it is important to make sure the generated figures and output are reproducible.

This output provides a way for you to inspect the output in a diff-friendly manner so that it's easy to see the changes that occur due to new software versions or randomisation.

⏱️ Updated at 2023-07-25 23:33:38 +0000

[edoyango]

A couple comments after having gone through the preceding episodes.

[joelnitta]

@multimeric thanks for your patience with #19, which has now been merged.

Is this PR basically ready to go in terms of content? There was a fair bit of discussion about it earlier, but seems to have quieted down recently (I personally don't use an HPC server so don't have much to add).

Also, in the OP you mentioned Once/if https://github.com/carpentries-incubator/targets-workshop/pull/19 is merged, some of this will need re-writing to remove redundancy. Does that still need to happen?

[multimeric]

Yep, the content is all sorted, it's what I presented in July. But indeed I do need to rewrite some of this now that #19 has been merged.