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iqtools

Collection of code for working with offline complex valued time series data (inphase and quadrature or IQ Data) with numpy written in Python.

These data are usually results of measurements of quantities in physical experiments in fundamental research or other related fields in science and engineering. These data are usually a result of radio frequency data acquisition systems involving one of the many methods of analog or digital Hilbert transformation for the creation of analytic signals, which in turn are easily processed in further stages. Applications include particle and fundamental physics, astrophysics, software defined radio and many more.

The usage allows direct programming using the class file and tools within own scrips or iPython Notebook sessions. The library offers an extendable structure for adding further methods e.g. in spectral analysis or non-linear time series analysis.

Related project:

A related project uses this library for a GUI representation and can be found here.

Code Components

IQBase class

This class covers all required parameters to handle time domain IQ data and their representation in frequency domain. Cuts, slices etc. are also available. Also a set of windowing functions are available.

Filetype specific classes

There are several specific classes available for each file type, all sharing the common base.

tools

A separate module includes several tools like input and output routines for convenience.

iqtools as a command line program

iqtools can be run as a command line program for processing data file as well. Type:

iqtools --help

For more information.

Supported file formats

Tektronix® binary file formats *.IQT, *.TIQ and *.XDAT

Data format from different generations of real time spectrum analyzers, including the 3000, 5000 and also 600 USB analyzer series.

In the tools section, there is also support for the *.specan data format which is the already converted trace format in the analyzer software.

Data format used in NI's LabView. Based on the python library pyTDMS by Floris van Vugt.

TCAP *.DAT files

TCAP file format form the older HP E1430A systems. In this case, the header information is stored in a TXT file, while the data file is stored in blocks of 2GB sequentially. More information can be found in this PhD thesis.

LeCroy® 584AM Data files

Reading data files from this old oscilloscope is possible with its own class.

Audio file *.WAV

This data format is mostly useful for software defined radio applications. Left and right channels are treated as real and imaginary components respectively, file duration and sampling rate are determined automatically. Memory map is activated to avoid the whole file will be loaded in memory.

raw binary *.BIN, ASCII *.CSV and *.TXT

The binary files begin with a 32-bit integer for sampling rate, followed by a 32-bit float for the center frequency. The rest of the file contains real and imaginary parts each as a 32-bit floats. File size is automatically calculated. All data are little endian. The ASCII files are tab or space separated values with real and imaginary on every line. These data will later be treated as 32-bit floating point numbers. Lines beginning with # are considered as comments and are ignored. Here also the first line contains the a 32-bit integer for sampling rate, followed by a 32-bit float for the center frequency. Such files are used as a result of synthesis signals. For example you can create a synthetic signal like the following:

import iqtools
freq = 400 # in Hz
center = 0 # in Hz
fs = 10000 # samples per second
duration = 3 # seconds
t, x = make_test_signal(freq, fs, duration, nharm=3, noise=False)
xbar, phase = make_analytical(x)
write_signal_as_binary('test_signal.bin', xbar, fs, center)
write_signal_as_ascii('test_signal.bin', xbar, fs, center)

GNURadio: Reading GNURadio files

If you have a flow graph in gnuradio and like to save files, you can use the file sink block and save data. Using iqtools you can then import the data as usual, except that you have to provide the sampling rate. Here is an example to plot an spectrogram:

import iqtools
filename = './test.bin'
iqdata = iqtools.GRData(filename, fs = 2.5e6, center=30e6)
iqdata.read_complete_file()
xx, yy, zz = iqdata.get_spectrogram(nframes=2000, lframes=1024)
iqtools.plot_spectrogram(xx, yy, zz)

GNURadio: Writing GNURadio files

You can use the library interface or the command line interface to convert your data into complex64 (I and Q each 32-bit) for further use in GNU Radio.

iqtools --verbose --lframes 1024 --nframes 1 --raw inputfile.tiq

The sampling rate and the center frequency will also be printed. Or within your program like:

import iqtools
filename = "inputfile.tiq"
iq=TIQData(filename)
iq.read_samples(1024*100)
write_signal_as_binary('inputfile.bin', iq.data_array, iq.fs, iq.center, write_header=False)

Later the file can be imported using a File Source block in GNU-Radio. Use a Throttle block with the sampling rate of the data.

CERN ROOT: Writing to CERN ROOT format

ROOT is an extensive data analysis framework that is very popular in the physics community. IQTools has possibilities to interface with ROOT using the uproot library.

1D spectra can be exported to ROOT histograms for later analysis in ROOT.

from iqtools import *
filename='foobar.tiq'
dd = TIQData(filename)
dd.read_samples(1024)
ff, pp, _ = dd.get_fft()
write_spectrum_to_root(ff, pp, filename, center=dd.center, title='spectrum')

the resulting ROOT file will contain a histogram. Also time domain data can be written to a ROOT file:

write_timedata_to_root(iq_obj, filename)

The structure of the root files in this case is like this: there are two trees inside, one tree has only one branch with an integer in it, which is the sampling rate, and another tree with a branch which is the center frequency. the other tree also has a branch in it, which contains the time series, which correspond to the power of the signal, meaning (I^2+Q^2). The distance between the time samples is 1/(sampling_rate).

Install / Uninstall

Dependencies

This library is written for Python 3 (python 2 is not supported). It depends on numpy, scipy, matplotlib, pytdms and uproot3, which can be installed via pip and the multitaper library which can be installed using python setup.

Installation details

For using iqtools you need a working python installation. We strongly recommend not to use or change your system python, instead please use Anaconda for Linux, MacOS and also Windows. For server installations and automatic analysis, we recommend using miniconda which is the smaller version of Anaconda distribution.

Additionally to Anaconda for Windows, we strongly recommend WinPython which indeed is a blessing, if you really need to deal with Windows. WinPython is also recommended if you are interested to run the optional related project iqgui that provides a GUI to iqtools, ny providing the necessary QT libraries and much more.

After installing your python distribution you can start installing the dependencies with PIP:

pip install numpy scipy matplotlib pytdms uproot3

Finally you need to install the multitaper library. Assuming you have a (temporary) directory called my_git_repos you can use git command to clone the repository there. If you don't have git you can just download the ZIP file from the repository and unpack it there:

cd my_git_repos
git clone https://github.com/xaratustrah/multitaper
cd multitaper
python setup.py install --record files.txt

Then you do the same thing for iqtools:

cd my_git_repos
git clone https://github.com/xaratustrah/iqtools
cd iqtools
python setup.py install --record files.txt

Use of sudo is not recommended.

Uninstall

Also be careful with this one:

cat files.txt | sudo xargs rm -rf

You can do this with multitaper library as well. Also you can use:

pip uninstall ...

to get rid of the rest.

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Code for working with TIQ files in numpy

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