1.5.3

fix misordering of spectra columns in txt/maf modes

1.5.2

bump version

v1.5.1

Fixes critical bug with --mode txt described in #18

1.4.4

fix bug in sample aggregation mode

v1.4.1

• bugfix for pooling samples

v1.3.2

• Lots of code beautifying + standardization
• put input processing functions into a single class
• added option for haploid processing (earlier code for this could not be toggled and made things extremely slow)

1.3.1

• fix subtype formatting in txt mode
• increase sample character limits

v1.1.4

• Miscellaneous bugfixes & improvements with conda & pip installation modes
• enable handling of haploid genotypes

v1.1.1

• fix issue with handling compressed fasta files

v1.1.0

• add option to impute missing genotypes with allele frequency of non-missing samples
• add fig S2 and simulated tumor data
• fix bug with inconsistent chromosome formatting in maf mode
• update handling of field formats in MAF files