Benchmarking Methods for Detecting Archaic Admixture

Installation

git clone https://github.com/carjed/archanc # or your own fork
git submodule update --init --recursive

Name		Name	Last commit message	Last commit date
Latest commit History 23 Commits
docker		docker
src		src
.gitignore		.gitignore
.gitmodules		.gitmodules
ArchIE_predict.R		ArchIE_predict.R
ArchIE_train.R		ArchIE_train.R
README.md		README.md
Snakefile		Snakefile
config.json		config.json
config.sh		config.sh
env.yml		env.yml
eval.ipynb		eval.ipynb
eval_models.py		eval_models.py
plot_sprime_wMNM_vs_woMNM.r		plot_sprime_wMNM_vs_woMNM.r
sandbox.ipynb		sandbox.ipynb
util.py		util.py