This repository details use of many software for generic purpose and genetic analysis; over time they largely become entries of the ceuadmin modules which are ready to use.
graph LR;
jekyll-rtd-theme --> csd3
csd3 --> system["THE SYSTEM"]
csd3 --> Python["Python packages"]
csd3 --> R["R packages"]
csd3 --> applications["APPLICATIONS"]
csd3 --> cardio["CARDIO (legacy materials)"]
system --> System
system --> sysdot["..."]
system --> Acknowledgement
system --> setup["Appendix A. Setup"]
applications --> ABCtoolbox
applications --> appdot["..."]
applications --> vsc["Visual Studio Code"]
applications --> vep["Appendix B. ensmebl-vep"]
Python --> gwas2vcf
Python --> Pythondot["..."]
Python --> Synase
R --> brms
R --> Rdot["..."]
R --> xlsx
{% include list.liquid all=true %}