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Tools and utilities for analysing cytometry data in Python

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CytoTools

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Overview

Welcome! This is CytoTools, a small package of utilities for analysis of cytometry data in Python. CytoTools started as a module in the first release of CytoPy.

CytoTools is now a standalone package that provides functions and classes for:

  • Reading flow/mass cytometry data into memory
  • Transforming flow/mass cytometry data using common methods such as Logicle and Arcsinh
  • Dimension reduction
  • Geometry tools useful for automated gating
  • Down/up-sampling data including density-dependent sampling
  • Landmark registration for peak alignment

For more information, check the full documentation here:


Release Notes

The CytoPy ecosystem is under development, see ### for details on release information.

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