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A small package of plotting utilities for use when analysing cytometry data in Python

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CytoPlots

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Overview

Welcome! This is CytoPlots, a small package of plotting utilities for use when analysing cytometry data in Python. CytoPlots started as a module in the first release of CytoPy.

CytoPlots is now a standalone package that provides functions and classes for:

  • Biaxial cytometry plots with common transforms such as logicle and arcsinh
  • Scatterplots intended for visualising high dimensional embeddings from tools like UMAP and tSNE
  • Density plots
  • Box and swarm plots with statistical annotations
  • Other cool utilities like a convenient wrapper on the matplotlib Figure object

For more information, check the full documentation here:


Release Notes

The CytoPy ecosystem is under development, see ### for details on release information.

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A small package of plotting utilities for use when analysing cytometry data in Python

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