Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

Port ldsc to Python 3 #360

Open
wants to merge 12 commits into
base: master
Choose a base branch
from
Open

Port ldsc to Python 3 #360

wants to merge 12 commits into from

Commits on May 4, 2022

  1. Run 2to3 over the codebase, making a quick port to python 3

    @pettyalex
    pettyalex committed May 4, 2022
    Configuration menu
    Copy the full SHA
    8599fce View commit details
    Browse the repository at this point in the history

Commits on Oct 11, 2022

  1. Reindent tabs to spaces, and correct outputing log as text not bytes

    @pettyalex
    pettyalex committed Oct 11, 2022
    Configuration menu
    Copy the full SHA
    32c5ace View commit details
    Browse the repository at this point in the history

  2. Add updated requirements.txt pinned to tested working versions

    @pettyalex
    pettyalex committed Oct 11, 2022
    Configuration menu
    Copy the full SHA
    c8daaef View commit details
    Browse the repository at this point in the history

Commits on Oct 12, 2022

  1. Remove black from dependencies, we don't need it.

    @pettyalex
    pettyalex committed Oct 12, 2022
    Configuration menu
    Copy the full SHA
    658f51c View commit details
    Browse the repository at this point in the history

  2. Clean up requirements.txt, conda env, and prepare python 3 port for m… 

    …erging.
    @pettyalex
    pettyalex committed Oct 12, 2022
    Configuration menu
    Copy the full SHA
    41eb713 View commit details
    Browse the repository at this point in the history

  3. Update to newer numpy, pandas APIs. Update to pass tests with the new… 

    …er interfaces.
    @pettyalex
    pettyalex committed Oct 12, 2022
    Configuration menu
    Copy the full SHA
    0f42a76 View commit details
    Browse the repository at this point in the history

  4. update setup.py to newer dependencies as well

    @pettyalex
    pettyalex committed Oct 12, 2022
    Configuration menu
    Copy the full SHA
    f3a2586 View commit details
    Browse the repository at this point in the history

  5. increment version number to 2.0

    @pettyalex
    pettyalex committed Oct 12, 2022
    Configuration menu
    Copy the full SHA
    367b473 View commit details
    Browse the repository at this point in the history

  6. Add readme.md into the setup.py for packaging into PyPI

    @pettyalex
    pettyalex committed Oct 12, 2022
    Configuration menu
    Copy the full SHA
    cbe8fcf View commit details
    Browse the repository at this point in the history

  7. do not pin to specific versions in install_requires to allower newer … 

    …dependencies
    @pettyalex
    pettyalex committed Oct 12, 2022
    Configuration menu
    Copy the full SHA
    9b3e1d5 View commit details
    Browse the repository at this point in the history

Commits on Jan 30, 2023

  1. Fix bug introduced with PR bulik#221: Error when partitioning heritab… 

    …ility by using variable before it's defined.
    @pettyalex
    pettyalex committed Jan 30, 2023
    Configuration menu
    Copy the full SHA
    b4bd7af View commit details
    Browse the repository at this point in the history

  2. v2.0.1 release, and publish to pypi

    @pettyalex
    pettyalex committed Jan 30, 2023
    Configuration menu
    Copy the full SHA
    58b000d View commit details
    Browse the repository at this point in the history