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Pull requests: broadinstitute/viral-ngs

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Pull requests list

update instance type to v2 for consolidate_run_tarballs
#1010 opened Nov 3, 2020 by tomkinsc Loading…
do not discard read IDs for single-end reads after running mvicuna
#1008 opened Mar 28, 2020 by tomkinsc Loading…
More robust determination of GATK version
#1004 opened Feb 8, 2020 by notestaff Loading…
@notestaff
expose read_utils.py::fastq_to_bam in wdl task and workflow
#1002 opened Feb 6, 2020 by tomkinsc Loading…
add code to illumina.py::RunInfo() to infer instrument model
#1000 opened Dec 3, 2019 by tomkinsc Loading…
1
add krakenuniq summary kmer filter
#998 opened Dec 3, 2019 by tomkinsc Loading…
8
pytest 4.2.0 -> 5.2.0
#989 opened Oct 3, 2019 by tomkinsc Loading…
add clumpify-based dedup
#970 opened Jul 2, 2019 by tomkinsc Loading…
31
Kraken2 depletion for human reads as alternative to bmtagger
#938 opened Mar 8, 2019 by yesimon Loading…
2
open_or_gzopen -> compressed_open. Add support for zstd.
#937 opened Mar 8, 2019 by yesimon Loading…
4
Split out TaxonomyDB into a separate python lib
#935 opened Mar 5, 2019 by yesimon Loading…
1
testing-related fixes
#913 opened Jan 20, 2019 by notestaff Loading…
@notestaff
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