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35 Open 24 Closed
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Issues list

refact: add utility tool to enable direct run of funpipe modules
#64 opened Jan 9, 2024 by xiaoli0
@xiaoli0
refact: update OOP modules using FILE enhancement New feature or request
#63 opened Jan 9, 2024 by xiaoli0
@xiaoli0
feat: add FILE base object for all formats enhancement New feature or request
#62 opened Jan 9, 2024 by xiaoli0
@xiaoli0
docs: update README to latest version
#61 opened Jan 8, 2024 by xiaoli0
@xiaoli0
add gaemr to pypi and conda env enhancement New feature or request
#57 opened Jun 10, 2019 by xiaoli0
docker image to google contain registry enhancement New feature or request
#56 opened May 10, 2019 by xiaoli0
python version test badge enhancement New feature or request
#55 opened Mar 4, 2019 by xiaoli0 Stable Public release
coverall badge enhancement New feature or request
#54 opened Mar 4, 2019 by xiaoli0 Stable Public release
Parse genotype concordance output enhancement New feature or request
#52 opened Mar 4, 2019 by xiaoli0 Incorporate major bioinformatics functionalities
Add GEMMA analysis pipeline for GWAS analysis enhancement New feature or request
#51 opened Feb 28, 2019 by xiaoli0 Incorporate major bioinformatics functionalities
Add popgenome analysis enhancement New feature or request
#50 opened Jan 31, 2019 by xiaoli0 Incorporate major bioinformatics functionalities
publication
#48 opened Jan 29, 2019 by xiaoli0 Stable Public release
Include examples in documentation enhancement New feature or request
#47 opened Jan 29, 2019 by xiaoli0 Alpha release for preprint
coverage_plot.py clustering update enhancement New feature or request
#46 opened Jan 28, 2019 by xiaoli0
2 tasks
Function improvement for alpha
Update variable names: cov_tsv referred to different files enhancement New feature or request
#45 opened Jan 23, 2019 by xiaoli0 Function improvement for alpha
replace coverage_barplot.R with covisr package
#43 opened Jan 18, 2019 by xiaoli0 Function improvement for alpha
add option of coverage_analysis.py for project directory enhancement New feature or request
#42 opened Jan 18, 2019 by xiaoli0 Function improvement for alpha
replace R scripts low priority
#41 opened Jan 16, 2019 by xiaoli0 Alpha release for preprint
automate qc metr plot enhancement New feature or request
#39 opened Dec 14, 2018 by xiaoli0 Incorporate major bioinformatics functionalities
docker use GATK4 enhancement New feature or request
#37 opened Nov 30, 2018 by xiaoli0 Stable Public release
add readthedoc enhancement New feature or request
#36 opened Nov 30, 2018 by xiaoli0 Stable Public release
incorporate legacy tool enhancement New feature or request
#35 opened Nov 28, 2018 by xiaoli0 Incorporate major bioinformatics functionalities
add mating type analysis to the pipeline enhancement New feature or request
#32 opened Oct 31, 2018 by xiaoli0 Incorporate major bioinformatics functionalities
work with compressed VCFs enhancement New feature or request low priority
#31 opened Oct 24, 2018 by xiaoli0 Incorporate major bioinformatics functionalities
fully setup readdoc enhancement New feature or request low priority
#30 opened Oct 23, 2018 by xiaoli0 Stable Public release
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