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admixr 0.8.0
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@bodkan bodkan released this 14 Jun 11:49
v0.8.0
38e4c66

  • New function loginfo() which operates on any output object from an admixr wrapper and shows the full log output (the “log file” in ADMIXTOOLS jargon) associated with the analysis. It also has options for saving the log file to a permanent location and to only show a log file for a target sample of interest (relevant for qpAdm analyses with multiple targets at once).

  • admixr can now (hopefully) detect broken/truncated output files generated by ADMIXTOOLS whenever there is some fatal issue with an analysis. The package should now detect this and inform the user.

  • Removed qpAdm argument details - the user will always want to see the full analysis summary so this option is redundant. It is still kept in qpWave - for now, until I figure out how useful the full output actually is. Given the implementation of loginfo() above, we might remove the argument from qpWave too at some point soon.

  • The function download_data() fetches data from a more stable location.

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