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Update R-CMD-check.yaml
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bodkan committed May 10, 2024
1 parent c995de3 commit bb0ce9b
Showing 1 changed file with 6 additions and 5 deletions.
11 changes: 6 additions & 5 deletions .github/workflows/R-CMD-check.yaml
Expand Up @@ -27,17 +27,17 @@ jobs:
# - https://github.com/lcolladotor/biocthis/issues/27
- {os: macOS-latest, r: 'release'}
- {os: windows-latest, r: 'release'}
- {os: ubuntu-latest, r: 'devel', http-user-agent: 'release'}
- {os: ubuntu-latest, r: 'release'}
- {os: ubuntu-latest, r: 'oldrel-1'}
- {os: ubuntu-latest, r: 'devel'}
- {os: ubuntu-latest, r: 'release'}
- {os: ubuntu-latest, r: 'oldrel-1'}
admixtools: ["7.0.2"] #, "6.0", "5.1"]

env:
GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
R_KEEP_PKG_SOURCE: yes

steps:
- uses: actions/checkout@v2
- uses: actions/checkout@v4

- name: Install ADMIXTOOLS/admixr dependencies (Linux)
if: runner.os == 'Linux'
Expand All @@ -48,7 +48,8 @@ jobs:
run: brew install openblas gsl lapack bedtools

- name: Compile and install ADMIXTOOLS (Linux + macOS)
if: runner.os != 'Windows'
# if: runner.os != 'Windows'
if: runner.os == 'Linux'
run: |
# create a single directory for all external software
mkdir -p ~/deps
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