Parse 'best coefficients' line in qpAdm output

bodkan · Dec 2, 2018 · 93d8dee · 93d8dee
1 parent bbc88ac
commit 93d8dee
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Showing 2 changed files with 22 additions and 22 deletions.
diff --git a/R/output_parsers.R b/R/output_parsers.R
@@ -180,8 +180,8 @@ read_qpWave <- function(log_lines, details = FALSE) {
 # Read output log file from a qp3Pop run.
 read_qpAdm <- function(log_lines) {
   # parse the admixture proportions and standard errors
-  stats <- stringr::str_subset(log_lines, "(Jackknife mean|std. errors):") %>%
-    stringr::str_replace("(Jackknife mean|std. errors): +", "") %>%
+  stats <- stringr::str_subset(log_lines, "(best coefficients|std. errors):") %>%
+    stringr::str_replace("(best coefficients|std. errors): +", "") %>%
     stringr::str_replace_all(" +", " ") %>%
     stringr::str_replace_all("^ | $", "") %>%
     stringr::str_split(" ") %>%

diff --git a/docs/articles/tutorial.html b/docs/articles/tutorial.html