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* Update Dockerfile * new script * bump req. versions
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,110 @@ | ||
| #!/bin/bash | ||
| show_help() { | ||
| echo "Usage:" | ||
| echo "$(basename $0) host-notebook --port 8888 --listen 127.0.0.1" | ||
| echo "$(basename $0) run-tests" | ||
| } | ||
| set -euxo pipefail | ||
|
|
||
| HOST_NOTEBOOK=0 | ||
| RUN_TESTS=0 | ||
| PORT=8000 | ||
| while [ $# -gt 0 ]; do | ||
| case "$1" in | ||
| host-notebook) | ||
| HOST_NOTEBOOK=1 | ||
| shift | ||
| ;; | ||
| --port) | ||
| shift | ||
| PORT=$1 | ||
| shift | ||
| ;; | ||
| --listen) | ||
| shift | ||
| LISTEN=$1 | ||
| shift | ||
| ;; | ||
| run-tests) | ||
| RUN_TESTS=1 | ||
| shift | ||
| ;; | ||
| --help|-h) | ||
| show_help | ||
| exit 0 | ||
| ;; | ||
| --) | ||
| break; | ||
| ;; | ||
| *) | ||
| show_help | ||
| exit 1 | ||
| ;; | ||
| esac | ||
| done | ||
|
|
||
| if ! which podrun >/dev/null; then | ||
| SOME_TEMP_DIR=$(mktemp -d) | ||
| trap 'rm -rf -- "$SOME_TEMP_DIR"' EXIT | ||
| ( cd "$SOME_TEMP_DIR"; curl -LOs https://raw.githubusercontent.com/bjodah/dotfiles/master/per-leaf-dir/bin/podrun; chmod +x podrun ) | ||
| export PATH="$SOME_TEMP_DIR:$PATH" | ||
| fi | ||
|
|
||
| SCRIPTS_DIR=$(dirname $(realpath "$BASH_SOURCE")) | ||
| REPO_DIR=$(realpath "$SCRIPTS_DIR/..") | ||
| ENV_DIR="$REPO_DIR/.env" | ||
| PKG_NAME=${PKG_NAME:-$(basename $REPO_DIR)} | ||
|
|
||
| mkdir -p $ENV_DIR | ||
|
|
||
| cat <<EOF>$ENV_DIR/setup.sh | ||
| if [ ! -d .env/ ]; then | ||
| >&2 echo "No .env directory?" | ||
| exit 1 | ||
| fi | ||
| if [ ! -d .env/venv ]; then | ||
| python3 -m venv .env/venv | ||
| fi | ||
| source .env/venv/bin/activate | ||
| if ! python -c "import pycvodes" 2>&1 >/dev/null; then | ||
| python -m pip install --upgrade-strategy=eager --upgrade pip && \ | ||
| python -m pip install --upgrade-strategy=eager numpy 'cython>=3.0.10' setuptools && \ | ||
| env \ | ||
| PYCVODES_NO_LAPACK=1 \ | ||
| PYCVODES_NO_KLU=1 \ | ||
| LDFLAGS='-Wl,--disable-new-dtags -Wl,-rpath,/usr/local/lib -L/usr/local/lib' \ | ||
| python -m pip install --cache-dir .env/pypi-cache -e .[all] | ||
| fi | ||
| if ! python -c "import pyodesys" 2>&1 >/dev/null; then | ||
| python -m pip install --cache-dir .env/pypi-cache -e .[all] | ||
| #jupyter-nbextension enable --user --py widgetsnbextension | ||
| fi | ||
| export MPLBACKEND=Agg | ||
| EOF | ||
| cat <<EOF>$ENV_DIR/run-tests.sh | ||
| #!/bin/bash | ||
| set -e | ||
| source .env/setup.sh | ||
| pytest -sv -ra --pyargs $PKG_NAME | ||
| EOF | ||
| cat <<EOF>$ENV_DIR/host-notebook.sh | ||
| #!/bin/bash | ||
| set -e | ||
| source .env/setup.sh | ||
| jupyter notebook --no-browser --port $PORT --ip=* index.ipynb | ||
| EOF | ||
| if [ $RUN_TESTS = 1 ]; then | ||
| podrun --cont-img-dir $SCRIPTS_DIR/environment \ | ||
| --name "${PKG_NAME}_run_tests" \ | ||
| -- bash $ENV_DIR/run-tests.sh | ||
| fi | ||
| if [ $HOST_NOTEBOOK = 1 ]; then | ||
| podrun --cont-img-dir $SCRIPTS_DIR/environment \ | ||
| --name "${PKG_NAME}_host_notebook_${PORT}" \ | ||
| -p $LISTEN:$PORT:$PORT \ | ||
| -- bash $ENV_DIR/host-notebook.sh | ||
| fi |
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